Class | Line # | Actions | |||
---|---|---|---|---|---|
EbiFileRetrievedProxy | 29 | 15 | 6 |
1 | /* | |
2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
4 | * | |
5 | * This file is part of Jalview. | |
6 | * | |
7 | * Jalview is free software: you can redistribute it and/or | |
8 | * modify it under the terms of the GNU General Public License | |
9 | * as published by the Free Software Foundation, either version 3 | |
10 | * of the License, or (at your option) any later version. | |
11 | * | |
12 | * Jalview is distributed in the hope that it will be useful, but | |
13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
15 | * PURPOSE. See the GNU General Public License for more details. | |
16 | * | |
17 | * You should have received a copy of the GNU General Public License | |
18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
20 | */ | |
21 | package jalview.ws.dbsources; | |
22 | ||
23 | import jalview.ws.seqfetcher.DbSourceProxyImpl; | |
24 | ||
25 | import java.io.BufferedReader; | |
26 | import java.io.File; | |
27 | import java.io.FileReader; | |
28 | ||
29 | public abstract class EbiFileRetrievedProxy extends DbSourceProxyImpl | |
30 | { | |
31 | ||
32 | /** | |
33 | * temp path to retrieved file | |
34 | */ | |
35 | protected String file = null; | |
36 | ||
37 | 0 | public StringBuffer getRawRecords() |
38 | { | |
39 | 0 | if (file == null) |
40 | { | |
41 | 0 | return null; |
42 | } | |
43 | 0 | StringBuffer bf = null; |
44 | 0 | try |
45 | { | |
46 | 0 | File f = new File(file); |
47 | 0 | if (f.exists()) |
48 | { | |
49 | 0 | bf = new StringBuffer(); |
50 | 0 | BufferedReader breader = new BufferedReader(new FileReader(f)); |
51 | 0 | String line = null; |
52 | 0 | while (breader.ready() && (line = breader.readLine()) != null) |
53 | { | |
54 | 0 | bf.append(line); |
55 | } | |
56 | 0 | breader.close(); |
57 | } | |
58 | } catch (Exception e) | |
59 | { | |
60 | 0 | jalview.bin.Console |
61 | .errPrintln("Warning: problems reading temp file " + file); | |
62 | 0 | return null; |
63 | } | |
64 | 0 | return bf; |
65 | } | |
66 | ||
67 | } |