Build: #1 failed
Job: Clover and Tests failed
Build log
The build generated 169 lines of output. Download or view full build log
| 07-Nov-2024 17:01:00 | Build Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests #1 (JB-GDB641-JOB1-1) started building on agent Default Agent |
| 07-Nov-2024 17:01:00 | |
| 07-Nov-2024 17:01:00 | Build working directory is /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 |
| 07-Nov-2024 17:01:00 | Executing build Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests #1 (JB-GDB641-JOB1-1) |
| 07-Nov-2024 17:01:00 | Starting task 'Checkout Default Repository' of type 'com.atlassian.bamboo.plugins.vcs:task.vcs.checkout' |
| 07-Nov-2024 17:01:00 | Checking out into /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 |
| 07-Nov-2024 17:01:00 | Updating source code to revision: 30bbab8b2e223cc7a28c69556092d405c8dc48f7 |
| 07-Nov-2024 17:01:00 | Fetching 'refs/heads/features/JAL-4489_clustering_and_pca_pasimap_views' from 'http://source.jalview.org/git/jalview.git'. |
| 07-Nov-2024 17:01:01 | Checking out revision 30bbab8b2e223cc7a28c69556092d405c8dc48f7. |
| 07-Nov-2024 17:01:01 | Creating local git repository in '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/.git'. |
| 07-Nov-2024 17:01:01 | Cloning into '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1'... |
| 07-Nov-2024 17:01:01 | done. |
| 07-Nov-2024 17:01:13 | Switched to a new branch 'features/JAL-4489_clustering_and_pca_pasimap_views' |
| 07-Nov-2024 17:01:13 | Branch features/JAL-4489_clustering_and_pca_pasimap_views set up to track remote branch features/JAL-4489_clustering_and_pca_pasimap_views from origin. |
| 07-Nov-2024 17:01:13 | Updated source code to revision: 30bbab8b2e223cc7a28c69556092d405c8dc48f7 |
| 07-Nov-2024 17:01:13 | Finished task 'Checkout Default Repository' with result: Success |
| 07-Nov-2024 17:01:13 | Running pre-build action: VCS Version Collector |
| 07-Nov-2024 17:01:13 | Running pre-build action: Artifactory Release Staging |
| 07-Nov-2024 17:01:13 | Starting task 'Run tests with openclover under gradle' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 07-Nov-2024 17:01:13 | Bamboo Artifactory Plugin version: 2.6.2 |
| 07-Nov-2024 17:01:13 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests #1 (JB-GDB641-JOB1-1)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_revision_number=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB641-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDB641-JOB1 bamboo_shortPlanName=features-JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_46498179_git_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB641-JOB1-1 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views bamboo_shortPlanKey=GDB641 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_buildTimeStamp=2024-11-07T17:01:00.737Z bamboo_repository_git_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_buildResultKey=JB-GDB641-JOB1-1 bamboo_repository_branch_name=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=30bbab8b2e223cc7a28c69556092d405c8dc48f7 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git bamboo_repository_46498179_git_username= JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=false bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_repository_46498179_name=Jalview Git bamboo_planRepository_branchDisplayName=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_46498179_revision_number=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_repository_46498179_branch_name=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=features/JAL-4489_clustering_and_pca_pasimap_views _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_repository_46498179_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_plan_storageTag=plan-46301957 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 bamboo_planKey=JB-GDB641 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=features/JAL-4489_clustering_and_pca_pasimap_views PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 07-Nov-2024 17:01:13 | 444 |
| 07-Nov-2024 17:01:13 | Starting a Gradle Daemon (subsequent builds will be faster) |
| 07-Nov-2024 17:01:22 | |
| 07-Nov-2024 17:01:22 | > Configure project : |
| 07-Nov-2024 17:01:22 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 07-Nov-2024 17:01:22 | JALVIEW_VERSION is set to '2.11.4.1' |
| 07-Nov-2024 17:01:22 | HEADLESS BUILD |
| 07-Nov-2024 17:01:22 | J2S ENABLED |
| 07-Nov-2024 17:01:23 | Using a LOCAL profile. |
| 07-Nov-2024 17:01:24 | eclipseDir exists |
| 07-Nov-2024 17:01:24 | |
| 07-Nov-2024 17:01:24 | > Task :clean |
| 07-Nov-2024 17:01:24 | > Task :cleanClover |
| 07-Nov-2024 17:01:24 | > Task :cleanTest UP-TO-DATE |
| 07-Nov-2024 17:01:27 | |
| 07-Nov-2024 17:01:27 | > Task :cloverInstrJava |
| 07-Nov-2024 17:01:27 | Clover: About to instrument 1106 files |
| 07-Nov-2024 17:01:27 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 07-Nov-2024 17:01:27 | Creating new database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover.db'. |
| 07-Nov-2024 17:01:27 | Processing files at 1.9 source level. |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:31 | WARN: Trying to add a statement but current method is null. Did you put CLOVER:OFF before a method signature and CLOVER:ON inside a method body? |
| 07-Nov-2024 17:01:38 | Clover all over. Instrumented 1106 files (112 packages). |
| 07-Nov-2024 17:01:40 | |
| 07-Nov-2024 17:01:40 | > Task :cloverInstrTests |
| 07-Nov-2024 17:01:40 | Clover: About to instrument test files |
| 07-Nov-2024 17:01:40 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 07-Nov-2024 17:01:40 | Updating existing database at '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover.db'. |
| 07-Nov-2024 17:01:40 | Processing files at 1.9 source level. |
| 07-Nov-2024 17:01:43 | Clover all over. Instrumented 291 files (52 packages). |
| 07-Nov-2024 17:01:43 | 1594 test methods detected. |
| 07-Nov-2024 17:01:43 | |
| 07-Nov-2024 17:01:43 | > Task :cloverInstr |
| 07-Nov-2024 17:01:47 | |
| 07-Nov-2024 17:01:47 | > Task :compileCloverJava |
| 07-Nov-2024 17:01:47 | Execution optimizations have been disabled for task ':compileCloverJava' to ensure correctness due to the following reasons: |
| 07-Nov-2024 17:01:47 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrJava' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 07-Nov-2024 17:01:47 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover-classes'. Reason: Task ':cloverInstrTests' uses this output of task ':compileCloverJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 07-Nov-2024 17:01:47 | - Gradle detected a problem with the following location: '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover-instr'. Reason: Task ':compileCloverJava' uses this output of task ':cloverInstrJava' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.4.2/userguide/validation_problems.html#implicit_dependency for more details about this problem. |
| 07-Nov-2024 17:01:47 | Setting target compatibility to 11 |
| 07-Nov-2024 17:02:08 | /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/clover/clover-instr/jalview/project/Jalview2XML.java:6772: error: cannot find symbol |
| 07-Nov-2024 17:02:08 | __CLR4_4_12n9u2n9um37k1sbw.R.inc(127064);panel.getPasimapModel().setPaSiMap(pasimap); |
| 07-Nov-2024 17:02:08 | ^ |
| 07-Nov-2024 17:02:08 | symbol: method setPaSiMap(PaSiMap) |
| 07-Nov-2024 17:02:08 | location: class PaSiMapModel |
| 07-Nov-2024 17:02:10 | Note: Some input files use or override a deprecated API. |
| 07-Nov-2024 17:02:10 | Note: Recompile with -Xlint:deprecation for details. |
| 07-Nov-2024 17:02:10 | Note: Some input files use unchecked or unsafe operations. |
| 07-Nov-2024 17:02:10 | Note: Recompile with -Xlint:unchecked for details. |
| 07-Nov-2024 17:02:10 | 1 error |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | > Task :compileCloverJava FAILED |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | Execution optimizations have been disabled for 1 invalid unit(s) of work during this build to ensure correctness. |
| 07-Nov-2024 17:02:10 | Please consult deprecation warnings for more details. |
| 07-Nov-2024 17:02:10 | 6 actionable tasks: 5 executed, 1 up-to-date |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | FAILURE: Build failed with an exception. |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | * What went wrong: |
| 07-Nov-2024 17:02:10 | Execution failed for task ':compileCloverJava'. |
| 07-Nov-2024 17:02:10 | > Compilation failed; see the compiler error output for details. |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | * Try: |
| 07-Nov-2024 17:02:10 | > Run with --stacktrace option to get the stack trace. |
| 07-Nov-2024 17:02:10 | > Run with --info or --debug option to get more log output. |
| 07-Nov-2024 17:02:10 | > Run with --scan to get full insights. |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | * Get more help at https://help.gradle.org |
| 07-Nov-2024 17:02:10 | |
| 07-Nov-2024 17:02:10 | BUILD FAILED in 57s |
| 07-Nov-2024 17:02:11 | |
| 07-Nov-2024 17:02:11 | Failing task since return code of [/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test] was 1 while expected 0 |
| 07-Nov-2024 17:02:11 | Finished task 'Run tests with openclover under gradle' with result: Failed |
| 07-Nov-2024 17:02:11 | Starting task 'Clover Report' of type 'org.jfrog.bamboo.bamboo-artifactory-plugin:artifactoryGradleTask' |
| 07-Nov-2024 17:02:11 | Bamboo Artifactory Plugin version: 2.6.2 |
| 07-Nov-2024 17:02:11 | Beginning to execute external process for build 'Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests #1 (JB-GDB641-JOB1-1)' ... running command line: /home/bamboo/buildtools/x11-gradle/bin/gradle --no-daemon -Pclover=true -PJAVA_VERSION=11 cloverReport ... in: /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 ... using extra environment variables: bamboo_planRepository_1_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_capability_system_builder_maven_Artifactory_Maven_3=/usr CATALINA_PID=/home/bamboo/latest/work/bamboo.pid bamboo_planRepository_1_branchDisplayName=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_revision_number=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_resultsUrl=https://builds.jalview.org/browse/JB-GDB641-JOB1-1 JAVA_OPTS=-Xms512m -Xmx1024m -Dbamboo.home=/srv/bamboo/bamboo-home -Djdk.tls.ephemeralDHKeySize=2048 bamboo_build_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 bamboo_planRepository_1_name=Jalview Git bamboo_buildKey=JB-GDB641-JOB1 bamboo_shortPlanName=features-JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_46498179_git_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_planRepository_name=Jalview Git LOGNAME=bamboo bamboo_buildNumber=1 PWD=/ bamboo_capability_system_builder_command_Eclipse_2019_09=/home/bamboo/buildtools/eclipse/jee-2019-09/eclipse/eclipse bamboo_shortJobName=Clover and Tests bamboo_buildResultsUrl=https://builds.jalview.org/browse/JB-GDB641-JOB1-1 bamboo_planRepository_repositoryUrl=http://source.jalview.org/git/jalview.git SHELL=/bin/bash bamboo_agentId=196609 bamboo_planName=Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views bamboo_shortPlanKey=GDB641 bamboo_shortJobKey=JOB1 bamboo_capability_system_jdk_OpenJDK_11=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk bamboo_planRepository_revision=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_buildTimeStamp=2024-11-07T17:01:00.737Z bamboo_repository_git_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_buildResultKey=JB-GDB641-JOB1-1 bamboo_repository_branch_name=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_buildPlanName=Jalview Builds - Gradle Develop Build - features-JAL-4489_clustering_and_pca_pasimap_views - Clover and Tests bamboo_capability_system_builder_ant_j11_Ant=/home/bamboo/buildtools/j11/ant-j11 bamboo_planRepository_1_revision=30bbab8b2e223cc7a28c69556092d405c8dc48f7 SHLVL=1 bamboo_capability_system_builder_ant_x11_Ant=/home/bamboo/buildtools/x11-ant bamboo_repository_name=Jalview Git bamboo_build_commandline_org_jfrog_bamboo_bamboo_artifactory_plugin_artifactoryGradleTask_2=/home/bamboo/buildtools/x11-gradle/bin/gradle -Pclover=true -PJAVA_VERSION=11 -Ptestng_excluded_groups=Not-bamboo clean cleanTest test bamboo_repository_46498179_git_username= JAVA_HOME=/home/bamboo/buildtools/jdk/jdk-11-linux-x64/jdk/ LANG=en_GB.UTF-8 bamboo_buildFailed=true bamboo_capability_system_jdk_OpenJDK_8=/home/bamboo/buildtools/jdk/jdk-8-linux-x64/jdk bamboo_planRepository_branch=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_agentWorkingDirectory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609 bamboo_jobFailed=true bamboo_capability_system_git_executable=/bin/git bamboo_repository_git_username= bamboo_repository_46498179_name=Jalview Git bamboo_planRepository_branchDisplayName=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_repository_46498179_revision_number=30bbab8b2e223cc7a28c69556092d405c8dc48f7 bamboo_repository_46498179_branch_name=features/JAL-4489_clustering_and_pca_pasimap_views bamboo_planRepository_1_type=gitv2 bamboo_planRepository_branchName=features/JAL-4489_clustering_and_pca_pasimap_views _=/usr/bin/java bamboo_capability_system_builder_ant_j11_x11_Ant=/home/bamboo/buildtools/j11/x11-ant-j11 bamboo_capability_system_builderivy_Ivy=/usr bamboo_repository_46498179_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_plan_storageTag=plan-46301957 bamboo_capability_system_builder_gradle_Gradle=/home/bamboo/buildtools/gradle bamboo_hg_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_hg-repositories-cache bamboo_planRepository_1_username= bamboo_planRepository_type=gitv2 USER=bamboo bamboo_git_cache_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/_git-repositories-cache bamboo_repository_git_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_capability_system_builder_ant_Ant=/usr/share/ant bamboo_capability_system_builder_mvn3_Maven_3=/usr/share/maven bamboo_tmp_directory=/srv/bamboo/bamboo-home/temp bamboo_working_directory=/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1 bamboo_planKey=JB-GDB641 bamboo_planRepository_1_repositoryUrl=http://source.jalview.org/git/jalview.git bamboo_planRepository_username= HOME=/home/bamboo bamboo_planRepository_1_branchName=features/JAL-4489_clustering_and_pca_pasimap_views PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin |
| 07-Nov-2024 17:02:11 | 444 |
| 07-Nov-2024 17:02:16 | |
| 07-Nov-2024 17:02:16 | > Configure project : |
| 07-Nov-2024 17:02:16 | Using properties from file './utils/channels/default/channel_gradle.properties' |
| 07-Nov-2024 17:02:16 | JALVIEW_VERSION is set to '2.11.4.1' |
| 07-Nov-2024 17:02:16 | HEADLESS BUILD |
| 07-Nov-2024 17:02:16 | J2S ENABLED |
| 07-Nov-2024 17:02:16 | Using a LOCAL profile. |
| 07-Nov-2024 17:02:17 | eclipseDir exists |
| 07-Nov-2024 17:02:19 | |
| 07-Nov-2024 17:02:19 | > Task :cloverHtmlReport |
| 07-Nov-2024 17:02:19 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 07-Nov-2024 17:02:19 | Writing HTML report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/reports/clover' |
| 07-Nov-2024 17:02:30 | Done. Processed 116 packages in 11483ms (98ms per package). |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | > Task :cloverXmlReport |
| 07-Nov-2024 17:02:34 | OpenClover Version 4.4.1, built on October 11 2019 (build-1020) |
| 07-Nov-2024 17:02:34 | Writing report to '/srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/reports/clover/clover.xml' |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | > Task :cloverReport |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | See https://docs.gradle.org/7.4.2/userguide/command_line_interface.html#sec:command_line_warnings |
| 07-Nov-2024 17:02:34 | |
| 07-Nov-2024 17:02:34 | BUILD SUCCESSFUL in 23s |
| 07-Nov-2024 17:02:34 | 2 actionable tasks: 2 executed |
| 07-Nov-2024 17:02:34 | Finished task 'Clover Report' with result: Success |
| 07-Nov-2024 17:02:34 | Starting task 'TestNG Parser' of type 'com.atlassian.bamboo.plugins.testresultparser:task.testresultparser.testng' |
| 07-Nov-2024 17:02:34 | Parsing test results under /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1... |
| 07-Nov-2024 17:02:34 | Failing task since test cases were expected but none were found. |
| 07-Nov-2024 17:02:34 | Finished task 'TestNG Parser' with result: Failed |
| 07-Nov-2024 17:02:34 | Running post build plugin 'NCover Results Collector' |
| 07-Nov-2024 17:02:34 | Running post build plugin 'Artifact Copier' |
| 07-Nov-2024 17:02:34 | Publishing an artifact: Clover Report (System) |
| 07-Nov-2024 17:02:35 | Finished publishing of artifact Job artifact: [Clover Report (System)], pattern: [**/*.*] anchored at: [build/reports/clover] in 1.020 s |
| 07-Nov-2024 17:02:35 | Publishing an artifact: TestNG report |
| 07-Nov-2024 17:02:35 | Unable to publish artifact [TestNG report]: the source directory /srv/bamboo/bamboo-home/xml-data/build-dir/196609/JB-GDB641-JOB1/build/reports/tests/test does not exist. |
| 07-Nov-2024 17:02:35 | The artifact hasn't been successfully published after 1.373 ms |
| 07-Nov-2024 17:02:35 | Running post build plugin 'Artifactory Release Management Staging' |
| 07-Nov-2024 17:02:35 | Running post build plugin 'Artifactory Build Info Copier' |
| 07-Nov-2024 17:02:35 | Running post build plugin 'Artifactory Gradle Properties Info Copier' |
| 07-Nov-2024 17:02:35 | Running post build plugin 'npm Cache Cleanup' |
| 07-Nov-2024 17:02:35 | Running post build plugin 'Clover Results Collector' |
| 07-Nov-2024 17:02:35 | Running post build plugin 'Docker Container Cleanup' |
| 07-Nov-2024 17:02:35 | Finalising the build... |
| 07-Nov-2024 17:02:35 | Stopping timer. |
| 07-Nov-2024 17:02:35 | Build JB-GDB641-JOB1-1 completed. |
| 07-Nov-2024 17:02:35 | Running on server: post build plugin 'NCover Results Collector' |
| 07-Nov-2024 17:02:35 | Running on server: post build plugin 'Build Hanging Detection Configuration' |
| 07-Nov-2024 17:02:35 | Running on server: post build plugin 'Clover Delta Calculator' |
| 07-Nov-2024 17:02:35 | Running on server: post build plugin 'Maven Dependencies Postprocessor' |
| 07-Nov-2024 17:02:35 | All post build plugins have finished |
| 07-Nov-2024 17:02:35 | Generating build results summary... |
| 07-Nov-2024 17:02:35 | Saving build results to disk... |
| 07-Nov-2024 17:02:35 | Logging substituted variables... |
| 07-Nov-2024 17:02:35 | Indexing build results... |
| 07-Nov-2024 17:02:35 | Finished building JB-GDB641-JOB1-1. |