Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
UserColourSchemeTest	32	46	4	0.00%	Show methods

Class UserColourSchemeTest

Class UserColourSchemeTest	Line # 32	Total Statements 46	Complexity 4	TOTAL Coverage 0.00%
setUpJvOptionPane() : void   setUpJvOptionPane() : void	3535	2.02	1.01	0.0 0.00%
testParseAppletParameter() : void   testParseAppletParameter() : void	4242	30.030	1.01	0.0 0.00%
testToAppletParameter() : void   testToAppletParameter() : void	8080	3.03	1.01	0.0 0.00%
testConstructor_coloursArray() : void   testConstructor_coloursArray() : void	9595	11.011	1.01	0.0 0.00%

 

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1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.schemes;
22
23		import static org.testng.AssertJUnit.assertEquals;
24
25		import jalview.gui.JvOptionPane;
26
27		import java.awt.Color;
28
29		import org.testng.annotations.BeforeClass;
30		import org.testng.annotations.Test;
31
		0% Uncovered Elements: 50 (50) Complexity: 4 Complexity Density: 0.09
32		public class UserColourSchemeTest
33		{
34
		0% Uncovered Elements: 2 (2) Complexity: 1 Complexity Density: 0.5
35	0	@BeforeClass(alwaysRun = true)...
36		public void setUpJvOptionPane()
37		{
38	0	JvOptionPane.setInteractiveMode(false);
39	0	JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
40		}
41
		0% Uncovered Elements: 30 (30) Complexity: 1 Complexity Density: 0.03 4-
42	0	@Test(groups = "Functional")...
43		public void testParseAppletParameter()
44		{
45	0	UserColourScheme cs = new UserColourScheme("white");
46	0	cs.parseAppletParameter("D,E=red; K,R,H=0022FF; c=10 , 20,30");
47	0	assertEquals(Color.RED, cs.findColour('D'));
48	0	assertEquals(Color.RED, cs.findColour('d'));
49	0	assertEquals(Color.RED, cs.findColour('E'));
50	0	assertEquals(Color.RED, cs.findColour('e'));
51	0	Color c1 = new Color(0x0022ff);
52	0	assertEquals(c1, cs.findColour('K'));
53	0	assertEquals(c1, cs.findColour('R'));
54	0	assertEquals(c1, cs.findColour('h'));
55	0	Color c2 = new Color(10, 20, 30);
56	0	assertEquals(c2, cs.findColour('c'));
57	0	assertEquals(Color.WHITE, cs.findColour('G'));
58	0	assertEquals(Color.WHITE, cs.findColour('-'));
59	0	assertEquals(Color.WHITE, cs.findColour('.'));
60	0	assertEquals(Color.WHITE, cs.findColour(' '));
61
62	0	cs = new UserColourScheme("white");
63	0	cs.parseAppletParameter(
64		"D,E=red; K,R,H=0022FF; c=10 , 20,30;t=orange;lowercase=blue;s=pink");
65	0	assertEquals(Color.RED, cs.findColour('D'));
66	0	assertEquals(Color.blue, cs.findColour('d'));
67	0	assertEquals(Color.RED, cs.findColour('E'));
68	0	assertEquals(Color.blue, cs.findColour('e'));
69	0	assertEquals(c1, cs.findColour('K'));
70	0	assertEquals(c1, cs.findColour('R'));
71	0	assertEquals(Color.blue, cs.findColour('h'));
72	0	assertEquals(c2, cs.findColour('c'));
73		// 'lowercase' sets all lower-case not already set to the given colour
74	0	assertEquals(Color.orange, cs.findColour('t'));
75	0	assertEquals(Color.blue, cs.findColour('k'));
76	0	assertEquals(Color.blue, cs.findColour('a'));
77	0	assertEquals(Color.pink, cs.findColour('s'));
78		}
79
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33 4-
80	0	@Test(groups = "Functional")...
81		public void testToAppletParameter()
82		{
83	0	UserColourScheme cs = new UserColourScheme(
84		"E,D=red; K,R,H=0022FF; c=10 , 20,30");
85	0	String param = cs.toAppletParameter();
86	0	assertEquals("D,E=ff0000;H,K,R=0022ff;c=0a141e", param);
87		}
88
89		/**
90		* Test for user colour scheme constructed with a colour per residue,
91		* including gap. Note this can currently be done from the User Defined
92		* Colours dialog, but not by parsing a colours parameter, as
93		* parseAppletParameter only recognises amino acid codes.
94		*/
		0% Uncovered Elements: 11 (11) Complexity: 1 Complexity Density: 0.09 4-
95	0	@Test(groups = "Functional")...
96		public void testConstructor_coloursArray()
97		{
98	0	Color g = Color.green;
99	0	Color y = Color.yellow;
100	0	Color b = Color.blue;
101	0	Color r = Color.red;
102		// colours for ARNDCQEGHILKMFPSTWYVBZ and gap
103	0	Color[] colours = new Color[] { g, y, b, r, g, y, r, b, g, y, r, b, g,
104		y, r, b, g, y, r, b, g, y, r, g };
105	0	UserColourScheme cs = new UserColourScheme(colours);
106
107	0	assertEquals(g, cs.findColour('A'));
108	0	assertEquals(b, cs.findColour('n'));
109	0	assertEquals(g, cs.findColour('-'));
110	0	assertEquals(g, cs.findColour('.'));
111	0	assertEquals(g, cs.findColour(' '));
112		}
113		}