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com.stevesoft.pat.patInf
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.io.JalviewFileChooser.RecentlyOpened
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jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
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jalview.json.binding.biojs.BioJSReleasePojo
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com.stevesoft.pat.Rthings
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mc_view.Residue
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jalview.util.UrlConstants
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jalview.gui.ItemsRenderer
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jalview.io.JalviewFileFilter
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jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.ws.SequenceFetcher
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jalview.gui.SplashScreen
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jalview.ws.jws2.JabaWsServerQuery
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jalview.io.BioJsHTMLOutput
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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com.stevesoft.pat.OrMark
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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0.550%
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jalview.ext.jmol.JmolParser
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jalview.ws.jws2.jabaws2.Jws2Instance
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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mc_view.PDBChain
mc_view.PDBChain
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jalview.ws.utils.UrlDownloadClient
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.io.StructureFile
jalview.io.StructureFile
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.log.JalviewAppender
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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jalview.util.Format
jalview.util.Format
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jalview.ws.rest.RestServiceDescription
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jalview.util.Comparison
jalview.util.Comparison
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.3055555530.6%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.285714328.6%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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0.2692307826.9%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2514619825.1%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.ws.rest.params.Alignment
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.2404844324%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.220543822.1%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.20420.4%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2014388420.1%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.1986301419.9%
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jalview.gui.BlogReader
jalview.gui.BlogReader
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0.1933701619.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.191082819.1%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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0.1743869217.4%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1730769317.3%
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jalview.io.FileParse
jalview.io.FileParse
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0.1699164417%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1564625815.6%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.bin.Console
jalview.bin.Console
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0.1330049213.3%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
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0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.util.MapList
jalview.util.MapList
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0.1028037410.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
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0.0965517249.7%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.09523819.5%
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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0.09523819.5%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.092511019.3%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.092219029.2%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.081081088.1%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.088%
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
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0.079207927.9%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.0740740757.4%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.066666676.7%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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0.06474826.5%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.0616438356.2%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.0576923085.8%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0576131685.8%
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
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0.0569620245.7%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.0512820525.1%
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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0.0466321264.7%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.044428524.4%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.043478264.3%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.bin.Cache
jalview.bin.Cache
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0.038461543.8%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
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0.0366972463.7%
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jalview.util.UrlLink
jalview.util.UrlLink
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0.034090913.4%
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jalview.util.Platform
jalview.util.Platform
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0.033018873.3%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0310077523.1%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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0.0289855082.9%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.0227790442.3%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0211480372.1%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0155642021.6%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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0.0089285720.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.0041322310.4%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.00361010830.4%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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0.00278551530.3%
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
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0.00105042020.1%
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