Test curlyWUSSsecondaryStructureForRNASequence

Test	Status	Start time	Time (seconds)	Message
curlyWUSSsecondaryStructureForRNASequence	1PASS	7 Nov 13:02:59	0.019

Target Class	Coverage contributed by curlyWUSSsecondaryStructureForRNASequence
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf	1.0100%
com.stevesoft.pat.FastChar   com.stevesoft.pat.FastChar	1.0100%
jalview.ws.WSClient   jalview.ws.WSClient	1.0100%
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence   jalview.datamodel.AlignmentAnnotation.AnnotCharSequence	0.925925992.6%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark	0.8585%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings	0.8461538684.6%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark	0.880%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos	0.779069877.9%
com.stevesoft.pat.Skip2   com.stevesoft.pat.Skip2	0.777777877.8%
com.stevesoft.pat.FastBracket   com.stevesoft.pat.FastBracket	0.7544910375.4%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket	0.7575%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar	0.685714368.6%
com.stevesoft.pat.Range   com.stevesoft.pat.Range	0.681818268.2%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt	0.662566.3%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap	0.62562.5%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti	0.601851960.2%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern	0.583333358.3%
com.stevesoft.pat.Or   com.stevesoft.pat.Or	0.564102656.4%
com.stevesoft.pat.Start   com.stevesoft.pat.Start	0.5454545654.5%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt	0.5251798652.5%
com.stevesoft.pat.NullPattern   com.stevesoft.pat.NullPattern	0.550%
jalview.analysis.SecStrConsensus.SimpleBP   jalview.analysis.SecStrConsensus.SimpleBP	0.550%
jalview.io.AlignFile   jalview.io.AlignFile	0.4657534446.6%
com.stevesoft.pat.Branch   com.stevesoft.pat.Branch	0.4630872646.3%
com.stevesoft.pat.Skip   com.stevesoft.pat.Skip	0.4594594545.9%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient	0.4429530244.3%
jalview.io.StockholmFile   jalview.io.StockholmFile	0.433155143.3%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition	0.4285714342.9%
jalview.analysis.Rna   jalview.analysis.Rna	0.41541.5%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex	0.3863636338.6%
jalview.io.FastaFile   jalview.io.FastaFile	0.315315331.5%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation	0.31531.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription	0.31531.5%
com.stevesoft.pat.End   com.stevesoft.pat.End	0.3103448231%
com.stevesoft.pat.DotMulti   com.stevesoft.pat.DotMulti	0.2971014429.7%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient	0.2903225729%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset	0.2727272827.3%
jalview.datamodel.Annotation   jalview.datamodel.Annotation	0.2571428725.7%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance	0.2528735725.3%
com.stevesoft.pat.StringRule   com.stevesoft.pat.StringRule	0.2525%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText	0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment	0.2435897424.4%
jalview.util.MessageManager   jalview.util.MessageManager	0.2380952423.8%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor	0.2333333323.3%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client	0.2228915722.3%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes	0.217391321.7%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils	0.2108843521.1%
jalview.datamodel.Sequence   jalview.datamodel.Sequence	0.2076124520.8%
jalview.ws.rest.InputType   jalview.ws.rest.InputType	0.2056074720.6%
jalview.util.Comparison   jalview.util.Comparison	0.1968503919.7%
jalview.io.AnnotationFile   jalview.io.AnnotationFile	0.1956521719.6%
jalview.util.Format   jalview.util.Format	0.186335418.6%
jalview.io.FileParse   jalview.io.FileParse	0.161559916.2%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl	0.1598639516%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector	0.12408759412.4%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures	0.1210191112.1%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer	0.1188118811.9%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient	0.11538461611.5%
jalview.util.StringUtils   jalview.util.StringUtils	0.11239193411.2%
jalview.util.QuickSort   jalview.util.QuickSort	0.10679611610.7%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile	0.10256410410.3%
jalview.datamodel.Alignment   jalview.datamodel.Alignment	0.091247679.1%
com.stevesoft.pat.ReplaceRule   com.stevesoft.pat.ReplaceRule	0.08771938.8%
jalview.gui.Console   jalview.gui.Console	0.081081088.1%
jalview.io.FileFormats   jalview.io.FileFormats	0.088%
jalview.io.FileFormat   jalview.io.FileFormat	0.077519387.8%
jalview.log.JLogger   jalview.log.JLogger	0.065934076.6%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter	0.065217396.5%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager	0.059523816%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature	0.057553965.8%
jalview.bin.Console   jalview.bin.Console	0.0492610824.9%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore	0.0416666684.2%
jalview.bin.Cache   jalview.bin.Cache	0.031593413.2%
jalview.util.Platform   jalview.util.Platform	0.0188679251.9%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor	0.0156251.6%
jalview.gui.AlignFrame   jalview.gui.AlignFrame	0.0107488351.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences	0.009132420.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher	0.0089285720.9%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties	0.0078781520.8%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr	0.00278551530.3%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns	0.00235849060.2%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport	0.00151745070.2%