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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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1.0100%
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.xml.binding.jalview.AnnotationElement
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1.0100%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Group
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jalview.xml.binding.jalview.Pdbentry
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1.0100%
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1.0100%
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jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
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0.9494%
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0.928571492.9%
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jalview.xml.binding.jalview.Feature
jalview.xml.binding.jalview.Feature
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0.911764791.2%
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jalview.xml.binding.jalview.SequenceSet
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jalview.analysis.Conservation
jalview.analysis.Conservation
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jalview.viewmodel.styles.ViewStyle
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.xml.binding.jalview.JalviewModel.Viewport
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0.844202984.4%
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jalview.xml.binding.jalview.JalviewModel.JSeq.Pdbids
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jalview.xml.binding.jalview.Annotation
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0.790909179.1%
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jalview.util.LinkedIdentityHashSet
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jalview.xml.binding.jalview.JalviewModel.JSeq
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0.7575%
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jalview.io.BackupFilesPresetEntry
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jalview.gui.FeatureRenderer
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.util.MessageManager
jalview.util.MessageManager
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.550%
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jalview.viewmodel.ViewportProperties
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0.550%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.550%
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mc_view.Bond
mc_view.Bond
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com.stevesoft.pat.wrap.StringWrap
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jalview.schemes.ZappoColourScheme
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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jalview.schemes.BlossomColourScheme
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jalview.schemes.SunsetColourScheme
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.structure.StructureImportSettings
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jalview.io.FileLoader
jalview.io.FileLoader
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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jalview.workers.AlignCalcManager
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jalview.ws.jws2.MsaWSClient
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0.4429530244.3%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.io.StructureFile
jalview.io.StructureFile
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jalview.gui.ColourMenuHelper
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jalview.datamodel.HiddenCursorPosition
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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0.440%
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jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.37537.5%
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jalview.io.BackupFilenameParts
jalview.io.BackupFilenameParts
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0.3648648636.5%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.3619758236.2%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3563636235.6%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3437025834.4%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3333333433.3%
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jalview.datamodel.features.SequenceFeatures
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jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
jalview.xml.binding.jalview.JalviewModel.FeatureSettings.Setting
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jalview.io.AlignFile
jalview.io.AlignFile
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0.321917832.2%
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mc_view.PDBChain
mc_view.PDBChain
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0.3214285732.1%
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jalview.util.Format
jalview.util.Format
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0.3209109632.1%
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jalview.util.Comparison
jalview.util.Comparison
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0.3188976331.9%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.3174603331.7%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.31531.5%
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jalview.ws.rest.RestServiceDescription
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jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
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0.312531.2%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.3055555530.6%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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jalview.io.BackupFiles
jalview.io.BackupFiles
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0.29229.2%
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jalview.ws.jws2.SequenceAnnotationWSClient
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0.2903225729%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2812528.1%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.276816627.7%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2727272827.3%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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0.2692307826.9%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.258503425.9%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.250909125.1%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.2525%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.2482014424.8%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.245696424.6%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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0.2439024424.4%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.2228915722.3%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.2135922321.4%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.2123287621.2%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.io.FileParse
jalview.io.FileParse
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0.2033426220.3%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.2025316520.3%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1970443319.7%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1927374319.3%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.bin.Console
jalview.bin.Console
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0.172413817.2%
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1515%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1458258614.6%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.12422360512.4%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.11458333611.5%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.10706150510.7%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.098639469.9%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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0.0974025959.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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0.0947368449.5%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0936555869.4%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.0930232559.3%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.092219029.2%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.gui.Console
jalview.gui.Console
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0.081081088.1%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0786666657.9%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.0740740757.4%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.070175447%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.067278296.7%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.060924376.1%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.059649126%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
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jalview.util.Platform
jalview.util.Platform
|
0.0566037745.7%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0508241775.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
|
0.0427350444.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
|
0.0385756683.9%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
|
0.0373831763.7%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.035156253.5%
|
|
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
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|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0290581162.9%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0188679251.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
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mc_view.PDBfile
mc_view.PDBfile
|
0.0150375941.5%
|
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
|
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.0117753621.2%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0117328521.2%
|
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jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.01169590651.2%
|
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.01150747951.2%
|
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jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.0110497241.1%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
|
0.0105509961.1%
|
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|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0080409360.8%
|
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0041322310.4%
|
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|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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