|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
1.0100%
|
|
|
jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
|
0.810810881.1%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.5937559.4%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.util.UrlLink
jalview.util.UrlLink
|
0.481060648.1%
|
|
|
jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
|
0.4429530244.3%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3571428735.7%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3571428735.7%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.3474576234.7%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.gui.PopupMenu
jalview.gui.PopupMenu
|
0.3145956731.5%
|
|
|
jalview.ws.jws2.SequenceAnnotationWSClient
jalview.ws.jws2.SequenceAnnotationWSClient
|
0.2903225729%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2727272827.3%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.2528735725.3%
|
|
|
jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
|
0.2439024424.4%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.2424%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.2336633723.4%
|
|
|
jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
|
0.2228915722.3%
|
|
|
jalview.analysis.AlignmentAnnotationUtils
jalview.analysis.AlignmentAnnotationUtils
|
0.2197802222%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.2108843521.1%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.2051886820.5%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1690140816.9%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1674876816.7%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.1195158912%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.10679611610.7%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.099480979.9%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.098461549.8%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.084112158.4%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
|
|
|
jalview.urls.UrlProvider
jalview.urls.UrlProvider
|
0.079207927.9%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.076631267.7%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.063694276.4%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0620155046.2%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.059523816%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
|
0.0569620245.7%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.054181395.4%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.055%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
|
|
|
jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
|
0.0366972463.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.033232633.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0316804423.2%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0304550343%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0260707642.6%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0252100842.5%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0235849062.4%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.018264841.8%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0151.5%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.009132420.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.008968610.9%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0080409360.8%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.0078740160.8%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.00781250.8%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0070175440.7%
|
|
