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Test testFindComplementFeaturesAtResidue

Test
testFindComplementFeaturesAtResidue 1PASS 11 Nov 17:28:47 0.184
 
testFindComplementFeaturesAtResidue
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.urls.IdOrgSettings   jalview.urls.IdOrgSettings 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.workers.ComplementConsensusThread   jalview.workers.ComplementConsensusThread 0.916666791.7%
jalview.io.JalviewFileChooser.RecentlyOpened   jalview.io.JalviewFileChooser.RecentlyOpened 0.990%
jalview.util.UserAgent   jalview.util.UserAgent 0.885714388.6%
jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer   jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer 0.869565287%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.8476562584.8%
jalview.json.binding.biojs.BioJSReleasePojo   jalview.json.binding.biojs.BioJSReleasePojo 0.8461538684.6%
jalview.analysis.CodingUtils   jalview.analysis.CodingUtils 0.8275862382.8%
jalview.util.UrlConstants   jalview.util.UrlConstants 0.880%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.7783251477.8%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.7575%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.7575%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.770%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.io.JalviewFileFilter   jalview.io.JalviewFileFilter 0.694444469.4%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.689655269%
jalview.json.binding.biojs.BioJSRepositoryPojo   jalview.json.binding.biojs.BioJSRepositoryPojo 0.687568.8%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.666666766.7%
jalview.ws.utils.UrlDownloadClient   jalview.ws.utils.UrlDownloadClient 0.657142965.7%
jalview.util.ParseHtmlBodyAndLinks   jalview.util.ParseHtmlBodyAndLinks 0.594202959.4%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.588732458.9%
jalview.bin.ArgsParser   jalview.bin.ArgsParser 0.57557.5%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.572916757.3%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping   jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping 0.562556.2%
jalview.jbgui.GDesktop   jalview.jbgui.GDesktop 0.561855756.2%
jalview.io.BioJsHTMLOutput   jalview.io.BioJsHTMLOutput 0.5656%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings 0.555555655.6%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.511904851.2%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.508264550.8%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.gui.APQHandlers   jalview.gui.APQHandlers 0.434782643.5%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.gui.Console   jalview.gui.Console 0.4288990842.9%
jalview.util.QuickSort.IntComparator   jalview.util.QuickSort.IntComparator 0.4285714342.9%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.4285714342.9%
jalview.jbgui.GSplitFrame   jalview.jbgui.GSplitFrame 0.4246575242.5%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.4134615441.3%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology 0.412541.2%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.409090940.9%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.bin.argparser.ArgParser   jalview.bin.argparser.ArgParser 0.3984962439.8%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.3896713639%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.3885350238.9%
jalview.bin.Cache   jalview.bin.Cache 0.3856749238.6%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex 0.3853503238.5%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.3835616438.4%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.375527437.6%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.io.FileLoader   jalview.io.FileLoader 0.3578595235.8%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.io.AlignFile   jalview.io.AlignFile 0.356164435.6%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.349090934.9%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.3397435834%
jalview.util.Comparison   jalview.util.Comparison 0.3346456633.5%
jalview.gui.PromptUserConfig   jalview.gui.PromptUserConfig 0.3295454733%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.3289473732.9%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3267326732.7%
jalview.bin.argparser.ArgValues   jalview.bin.argparser.ArgValues 0.3253968432.5%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.3186646431.9%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3168433331.7%
jalview.io.FastaFile   jalview.io.FastaFile 0.315315331.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.3095238231%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser 0.2945544429.5%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.285714328.6%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.279365127.9%
jalview.util.Log4j   jalview.util.Log4j 0.2727272827.3%
jalview.analysis.Dna   jalview.analysis.Dna 0.270018627%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2688172226.9%
jalview.bin.argparser.ArgValue   jalview.bin.argparser.ArgValue 0.2686567326.9%
jalview.gui.SplitFrame   jalview.gui.SplitFrame 0.2671081726.7%
jalview.bin.Jalview   jalview.bin.Jalview 0.2653429526.5%
jalview.log.JLogger   jalview.log.JLogger 0.2637362826.4%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.263157926.3%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.io.JalviewFileChooser   jalview.io.JalviewFileChooser 0.25340625.3%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.2507552825.1%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory 0.2525%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.2475247524.8%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.2464788724.6%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.2456140424.6%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.datamodel.AlignedCodon   jalview.datamodel.AlignedCodon 0.2424242524.2%
jalview.bin.Console   jalview.bin.Console 0.241379324.1%
jalview.util.ErrorLog   jalview.util.ErrorLog 0.2352941223.5%
jalview.bin.BuildDetails   jalview.bin.BuildDetails 0.2352941223.5%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2352941223.5%
jalview.datamodel.VisibleContigsIterator   jalview.datamodel.VisibleContigsIterator 0.2340425623.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.2330097123.3%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.2309782723.1%
jalview.datamodel.AlignedCodonFrame   jalview.datamodel.AlignedCodonFrame 0.22184322.2%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.2206703922.1%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.20312520.3%
jalview.gui.Desktop   jalview.gui.Desktop 0.2027334920.3%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.220%
jalview.bin.JalviewTaskbar   jalview.bin.JalviewTaskbar 0.220%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.1989247419.9%
jalview.bin.argparser.SubVals   jalview.bin.argparser.SubVals 0.1958762919.6%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.1921749119.2%
jalview.datamodel.SearchResults.Match   jalview.datamodel.SearchResults.Match 0.1818181918.2%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.util.QuickSort   jalview.util.QuickSort 0.1715210417.2%
jalview.util.MapList   jalview.util.MapList 0.1713395617.1%
jalview.util.ShiftList   jalview.util.ShiftList 0.1694915316.9%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
jalview.io.FileParse   jalview.io.FileParse 0.164345416.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.datamodel.MappedFeatures   jalview.datamodel.MappedFeatures 0.149122814.9%
jalview.util.Format   jalview.util.Format 0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.1458333314.6%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.1385542213.9%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1340021513.4%
jalview.analysis.CodonComparator   jalview.analysis.CodonComparator 0.1290322512.9%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.1260504312.6%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.1258992912.6%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FileFormat   jalview.io.FileFormat 0.1240310112.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.util.StringUtils   jalview.util.StringUtils 0.1212%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.11538461611.5%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.11428571511.4%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.11180124411.2%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.10736842510.7%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.1026666710.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.0993788849.9%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken 0.096774199.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0926724159.3%
jalview.util.JSONUtils   jalview.util.JSONUtils 0.090909099.1%
jalview.util.ChannelProperties   jalview.util.ChannelProperties 0.0896551769%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.util.Platform   jalview.util.Platform 0.084905668.5%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.088%
jalview.urls.UrlProvider   jalview.urls.UrlProvider 0.079207927.9%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.07414837.4%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.069672137%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.util.LaunchUtils   jalview.util.LaunchUtils 0.0661764746.6%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.064285726.4%
jalview.bin.argparser.ArgValuesMap   jalview.bin.argparser.ArgValuesMap 0.063569686.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0589622635.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0576923085.8%
jalview.urls.CustomUrlProvider   jalview.urls.CustomUrlProvider 0.0569620245.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0560747655.6%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.0519480525.2%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.0487804864.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.04566214.6%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.045317224.5%
jalview.bin.argparser.Arg   jalview.bin.argparser.Arg 0.0451807234.5%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.util.UrlLink   jalview.util.UrlLink 0.037878793.8%
org.json.simple.JSONObject   org.json.simple.JSONObject 0.037735853.8%
jalview.urls.IdentifiersUrlProvider   jalview.urls.IdentifiersUrlProvider 0.0366972463.7%
jalview.bin.Commands   jalview.bin.Commands 0.0364321623.6%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.015094341.5%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.util.FileUtils   jalview.util.FileUtils 0.0106007071.1%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.0103092781%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
org.json.simple.JSONArray   org.json.simple.JSONArray 0.0080645160.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%