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jalview.io.FileFormat
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jalview.util.StringUtils
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jalview.io.FormatAdapter
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jalview.ws.rest.RestClient
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jalview.gui.PromptUserConfig
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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com.stevesoft.pat.parsePerl
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org.json.simple.parser.Yytoken
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jalview.workers.AlignCalcWorker
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jalview.util.JSONUtils
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jalview.ws.dbsources.Xfam
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jalview.util.CaseInsensitiveString
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jalview.util.ColorUtils
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.schemes.RNAHelicesColour
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jalview.gui.ProgressBar
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jalview.urls.UrlProvider
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jalview.bin.argparser.ArgParser
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
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jalview.util.LaunchUtils
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jalview.gui.IdwidthAdjuster
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jalview.fts.service.pdb.PDBFTSRestClient
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com.stevesoft.pat.RegOpt
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jalview.analysis.CrossRef
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jalview.datamodel.DBRefEntry
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jalview.gui.AnnotationPanel
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jalview.gui.ViewSelectionMenu
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jalview.urls.CustomUrlProvider
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jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.gui.IdCanvas
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jalview.analysis.GeneticCodes
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jalview.gui.StructureChooser
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jalview.gui.QuitHandler
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jalview.structure.StructureMapping
jalview.structure.StructureMapping
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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jalview.ws.dbsources.Pdb
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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jalview.util.UrlLink
jalview.util.UrlLink
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.datamodel.ColumnSelection.IntList
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jalview.urls.IdentifiersUrlProvider
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jalview.bin.Commands
jalview.bin.Commands
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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jalview.bin.argparser.Arg
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jalview.ws.jws1.JPredClient
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.util.MappingUtils
jalview.util.MappingUtils
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jalview.project.Jalview2XML
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
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jalview.schemes.ClustalxColourScheme
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jalview.gui.JvOptionPane
jalview.gui.JvOptionPane
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.datamodel.SearchResults
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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jalview.renderer.AnnotationRenderer
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jalview.gui.AnnotationLabels
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jalview.gui.SequenceFetcher
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jalview.datamodel.GroupSet
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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org.json.simple.JSONArray
org.json.simple.JSONArray
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jalview.datamodel.HiddenColumns
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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jalview.datamodel.ColumnSelection
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jalview.schemes.ResidueProperties
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