|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.analysis.AverageDistanceEngine
jalview.analysis.AverageDistanceEngine
|
0.8461538684.6%
|
|
|
jalview.analysis.TreeEngine
jalview.analysis.TreeEngine
|
0.7428571674.3%
|
|
|
jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
|
0.7115384371.2%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
0.678571467.9%
|
|
|
jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
|
0.6666%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.657142965.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.6565%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.5930232459.3%
|
|
|
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
|
0.5555%
|
|
|
jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
|
0.5355648453.6%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
0.550%
|
|
|
jalview.datamodel.GroupSetHolder
jalview.datamodel.GroupSetHolder
|
0.550%
|
|
|
jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.4942528649.4%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.448979644.9%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.440%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.3863636338.6%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.3680555536.8%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.3205128332.1%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.330%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.299212629.9%
|
|
|
jalview.datamodel.GroupSet
jalview.datamodel.GroupSet
|
0.2931034629.3%
|
|
|
jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
|
0.2916666629.2%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.285714328.6%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2759515627.6%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.272527.3%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2463636424.6%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
|
0.2272727322.7%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.1713395617.1%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.1666666716.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.1648351716.5%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
|
0.1504424815%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.140939614.1%
|
|
|
jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.14062514.1%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.137513.8%
|
|
|
jalview.io.NewickFile
jalview.io.NewickFile
|
0.1270207912.7%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.1203703712%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.1086956510.9%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.10679611610.7%
|
|
|
jalview.datamodel.ContactListImpl
jalview.datamodel.ContactListImpl
|
0.1016949110.2%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0985221649.9%
|
|
|
com.stevesoft.pat.Replacer
com.stevesoft.pat.Replacer
|
0.091891899.2%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.086956528.7%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.0833333368.3%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0779220767.8%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.074829937.5%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.0714285757.1%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.0577777775.8%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.0540540555.4%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0418994434.2%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.0416666684.2%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.025438912.5%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.0237068962.4%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0220385682.2%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0211480372.1%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.019801982%
|
|
|
jalview.math.Matrix
jalview.math.Matrix
|
0.0196078442%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0131578951.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0094339620.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0042016810.4%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.00278551530.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00227790440.2%
|
|
