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com.stevesoft.pat.patInf
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1.0100%
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jalview.gui.StructureViewer.ViewerType
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com.stevesoft.pat.Rthings
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mc_view.Residue
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jalview.util.LinkedIdentityHashSet
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mc_view.PDBChain
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com.stevesoft.pat.StrPos
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jalview.ext.jmol.JmolParser
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mc_view.Bond
mc_view.Bond
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jalview.bin.argparser.BootstrapArgs
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jalview.io.AlignFile
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jalview.gui.ColourMenuHelper
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jalview.datamodel.ResidueCount
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jalview.gui.AppJmol
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jalview.io.StructureFile
jalview.io.StructureFile
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jalview.bin.argparser.SubVals
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jalview.datamodel.HiddenCursorPosition
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jalview.bin.Commands
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.gui.ImageExporter
jalview.gui.ImageExporter
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.ext.so.SequenceOntology
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.schemes.ResidueColourScheme
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jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
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jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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jalview.schemes.StrandColourScheme
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jalview.schemes.BuriedColourScheme
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jalview.structure.StructureImportSettings
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jalview.util.Comparison
jalview.util.Comparison
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jalview.util.Format
jalview.util.Format
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jalview.bin.Cache
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jalview.io.FastaFile
jalview.io.FastaFile
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.util.MessageManager
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jalview.gui.AppJmolBinding
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jalview.jbgui.GStructureChooser.AssociateSeqPanel
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jalview.datamodel.Annotation
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.renderer.seqfeatures.FeatureColourFinder
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jalview.structures.models.AAStructureBindingModel
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mc_view.Atom
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jalview.io.IdentifyFile
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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jalview.util.QuickSort
jalview.util.QuickSort
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jalview.io.FileParse
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jalview.gui.StructureViewerBase
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jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.io.gff.SequenceOntologyFactory
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0.2525%
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jalview.ws.uimodel.AlignAnalysisUIText
jalview.ws.uimodel.AlignAnalysisUIText
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jalview.ws.rest.params.Alignment
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jalview.structure.StructureMapping
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jalview.util.ErrorLog
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jalview.bin.BuildDetails
jalview.bin.BuildDetails
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jalview.ws.jws2.Jws2Discoverer
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
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jalview.viewmodel.AlignmentViewport
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2187521.9%
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jalview.io.PDBFeatureSettings
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jalview.util.HttpUtils
jalview.util.HttpUtils
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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jalview.ws.rest.InputType
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jalview.bin.Console
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jalview.log.JLogger
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jalview.util.ImageMaker.TYPE
jalview.util.ImageMaker.TYPE
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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jalview.util.FileUtils
jalview.util.FileUtils
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.ws.jws1.WS1Client
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jalview.gui.PaintRefresher
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jalview.bin.Jalview
jalview.bin.Jalview
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jalview.gui.StructureViewer
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.log.JLoggerLog4j
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jalview.schemes.PIDColourScheme
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.viewmodel.ViewportRanges
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.util.Platform
jalview.util.Platform
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0.1226415112.3%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.structure.StructureCommand
jalview.structure.StructureCommand
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0.1212%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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jalview.renderer.ResidueShader
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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jalview.schemes.RNAHelicesColour
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jalview.io.FileFormat
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.ext.jmol.JmolCommands
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jalview.util.MapList
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jalview.bin.argparser.Arg
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com.stevesoft.pat.parsePerl
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jalview.gui.StructureChooser
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jalview.workers.AlignCalcWorker
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jalview.datamodel.Mapping
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jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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jalview.ws.dbsources.Xfam
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jalview.ws.dbsources.Pdb
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.schemes.FeatureColour
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jalview.util.ChannelProperties
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.0740740757.4%
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jalview.schemes.ColourSchemes
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0.070175447%
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jalview.gui.IdPanel
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jalview.util.LaunchUtils
jalview.util.LaunchUtils
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0.0661764746.6%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.0657894766.6%
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jalview.fts.service.pdb.PDBFTSRestClient
jalview.fts.service.pdb.PDBFTSRestClient
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com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
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0.06474826.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.0626423666.3%
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jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
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0.0616438356.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.0576923085.8%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.047619054.8%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
|
0.0416666684.2%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0402046784%
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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0.0390879473.9%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.0288461542.9%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0254237282.5%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.0245614032.5%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0235849062.4%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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jalview.gui.Console
jalview.gui.Console
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0.0206422022.1%
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jalview.gui.structurechooser.PDBStructureChooserQuerySource
jalview.gui.structurechooser.PDBStructureChooserQuerySource
|
0.017751481.8%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0155642021.6%
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mc_view.PDBfile
mc_view.PDBfile
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0.0150375941.5%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0136518771.4%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125412541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.010020041%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
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0.0089285720.9%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.00722021660.7%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00343642620.3%
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com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
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jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00105042020.1%
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