Test structureImageAnnotationsOutputTest

Test	Status	Start time	Time (seconds)	Message
structureImageAnnotationsOutputTest	1PASS	11 Nov 17:33:50	0.933

Target Class	Coverage contributed by structureImageAnnotationsOutputTest
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf	1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType	1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark	1.0100%
jalview.ws.WSClient   jalview.ws.WSClient	1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts	1.0100%
jalview.structure.StructureImportSettings.TFType   jalview.structure.StructureImportSettings.TFType	1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel	0.9494%
jalview.util.UserAgent   jalview.util.UserAgent	0.885714388.6%
jalview.analysis.Conservation   jalview.analysis.Conservation	0.871921287.2%
jalview.util.imagemaker.BitmapImageSizing   jalview.util.imagemaker.BitmapImageSizing	0.8709677587.1%
jalview.util.QuickSort.IntComparator   jalview.util.QuickSort.IntComparator	0.8571428785.7%
jalview.gui.StructureViewer.ViewerType   jalview.gui.StructureViewer.ViewerType	0.8461538684.6%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings	0.8461538684.6%
mc_view.Residue   mc_view.Residue	0.8461538684.6%
jalview.structure.AtomSpecModel   jalview.structure.AtomSpecModel	0.833333383.3%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet	0.7727272577.3%
jalview.structures.models.SequenceStructureBindingModel   jalview.structures.models.SequenceStructureBindingModel	0.7575%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme	0.7575%
jalview.fts.core.FTSDataColumnPreferences   jalview.fts.core.FTSDataColumnPreferences	0.745762774.6%
jalview.datamodel.Profiles   jalview.datamodel.Profiles	0.7333333573.3%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread	0.7272727572.7%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer	0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper	0.7142857371.4%
jalview.jbgui.GStructureViewer   jalview.jbgui.GStructureViewer	0.703296770.3%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher	0.678571467.9%
jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings	0.666666766.7%
jalview.workers.ConservationThread   jalview.workers.ConservationThread	0.655172465.5%
jalview.math.AlignmentDimension   jalview.math.AlignmentDimension	0.636363663.6%
jalview.util.MapUtils   jalview.util.MapUtils	0.608695660.9%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder	0.595238159.5%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame	0.581220758.1%
jalview.bin.ArgsParser   jalview.bin.ArgsParser	0.57557.5%
jalview.schemes.FeatureSettingsAdapter   jalview.schemes.FeatureSettingsAdapter	0.571428657.1%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString	0.565217456.5%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer	0.5656%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager	0.541666754.2%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser	0.5333333653.3%
mc_view.PDBChain   mc_view.PDBChain	0.5329670353.3%
jalview.gui.AssociatePdbFileWithSeq   jalview.gui.AssociatePdbFileWithSeq	0.52552.5%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos	0.523255852.3%
jalview.bin.argparser.ArgParser   jalview.bin.argparser.ArgParser	0.517293251.7%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties	0.550%
jalview.urls.IdOrgSettings   jalview.urls.IdOrgSettings	0.550%
mc_view.Bond   mc_view.Bond	0.550%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder	0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme	0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme	0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme	0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme	0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme	0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme	0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme	0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme	0.550%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme	0.4761904847.6%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs	0.475206647.5%
jalview.jbgui.GStructureChooser   jalview.jbgui.GStructureChooser	0.4727722747.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper	0.466101746.6%
jalview.io.StructureFile   jalview.io.StructureFile	0.465116346.5%
jalview.io.AlignFile   jalview.io.AlignFile	0.4589041245.9%
jalview.bin.argparser.ArgValue   jalview.bin.argparser.ArgValue	0.447761244.8%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount	0.4436363644.4%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient	0.4429530244.3%
jalview.bin.Commands   jalview.bin.Commands	0.4359296643.6%
jalview.bin.argparser.SubVals   jalview.bin.argparser.SubVals	0.432989743.3%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition	0.4285714342.9%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer	0.427884642.8%
jalview.gui.ImageExporter   jalview.gui.ImageExporter	0.4242424442.4%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11	0.4166666641.7%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq	0.4153846241.5%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology	0.412541.2%
jalview.io.FileLoader   jalview.io.FileLoader	0.4113712341.1%
jalview.datamodel.Profile   jalview.datamodel.Profile	0.410714341.1%
jalview.util.Comparison   jalview.util.Comparison	0.4094488340.9%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex	0.4012738840.1%
jalview.io.FileFormats   jalview.io.FileFormats	0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource	0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme	0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme	0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme	0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme	0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme	0.440%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings	0.440%
jalview.log.JalviewAppender   jalview.log.JalviewAppender	0.388888938.9%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry	0.3832599238.3%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding	0.3831775838.3%
jalview.datamodel.FloatContactMatrix   jalview.datamodel.FloatContactMatrix	0.3838%
jalview.util.ImageMaker   jalview.util.ImageMaker	0.3798449638%
jalview.bin.argparser.ArgValues   jalview.bin.argparser.ArgValues	0.3730158837.3%
jalview.bin.Cache   jalview.bin.Cache	0.3691460236.9%
jalview.util.Format   jalview.util.Format	0.3685300436.9%
jalview.gui.AlignViewport   jalview.gui.AlignViewport	0.365296836.5%
jalview.ws.datamodel.alphafold.PAEContactMatrix   jalview.ws.datamodel.alphafold.PAEContactMatrix	0.3628318636.3%
jalview.bin.argparser.ArgValuesMap   jalview.bin.argparser.ArgValuesMap	0.361858236.2%
jalview.io.FastaFile   jalview.io.FastaFile	0.3603603536%
jalview.util.MessageManager   jalview.util.MessageManager	0.3571428735.7%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel	0.3568904735.7%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding	0.353305835.3%
jalview.jbgui.GStructureChooser.AssociateSeqPanel   jalview.jbgui.GStructureChooser.AssociateSeqPanel	0.352941235.3%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature	0.3489208534.9%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle	0.3320312533.2%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager	0.3253333332.5%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures	0.3248407532.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription	0.31531.5%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser	0.3143564531.4%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar	0.3142857331.4%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation	0.3137531.4%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder	0.313725531.4%
jalview.gui.AppJmol   jalview.gui.AppJmol	0.3082706630.8%
jalview.datamodel.Sequence   jalview.datamodel.Sequence	0.3027681730.3%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient	0.2903225729%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel	0.2895662529%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource	0.285714328.6%
jalview.datamodel.Annotation   jalview.datamodel.Annotation	0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme	0.285714328.6%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder	0.282051328.2%
mc_view.Atom   mc_view.Atom	0.282051328.2%
jalview.gui.structurechooser.StructureChooserQuerySource   jalview.gui.structurechooser.StructureChooserQuerySource	0.2828%
jalview.io.IdentifyFile   jalview.io.IdentifyFile	0.279365127.9%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset	0.2727272827.3%
jalview.io.FileParse   jalview.io.FileParse	0.2674094726.7%
jalview.util.QuickSort   jalview.util.QuickSort	0.2653721626.5%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme	0.2608695626.1%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils	0.258503425.9%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport	0.257207925.7%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore	0.2567975825.7%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance	0.2528735725.3%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport	0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory	0.2525%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory	0.2525%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase	0.2492581624.9%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText	0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment	0.2435897424.4%
jalview.util.ErrorLog   jalview.util.ErrorLog	0.2352941223.5%
jalview.bin.BuildDetails   jalview.bin.BuildDetails	0.2352941223.5%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer	0.2336633723.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor	0.2333333323.3%
jalview.structure.StructureCommandsBase   jalview.structure.StructureCommandsBase	0.2317073223.2%
com.stevesoft.pat.Range   com.stevesoft.pat.Range	0.2272727322.7%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket	0.22522.5%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes	0.224806222.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client	0.2228915722.3%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed	0.2187521.9%
jalview.util.MapList   jalview.util.MapList	0.2149532721.5%
jalview.io.PDBFeatureSettings   jalview.io.PDBFeatureSettings	0.2142857221.4%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData	0.2127659621.3%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels	0.2115384621.2%
jalview.util.HttpUtils   jalview.util.HttpUtils	0.2105263221.1%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex	0.2072727220.7%
jalview.ws.rest.InputType   jalview.ws.rest.InputType	0.2056074720.6%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel	0.2050078220.5%
jalview.datamodel.Alignment   jalview.datamodel.Alignment	0.1964618319.6%
jalview.ws.datamodel.alphafold.MappableContactMatrix   jalview.ws.datamodel.alphafold.MappableContactMatrix	0.1924686119.2%
jalview.gui.ScalePanel   jalview.gui.ScalePanel	0.1914062519.1%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency	0.187763718.8%
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel   jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel	0.1857142918.6%
jalview.util.ImageMaker.TYPE   jalview.util.ImageMaker.TYPE	0.1818181918.2%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern	0.1805555518.1%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme	0.1803278618%
jalview.gui.IdCanvas   jalview.gui.IdCanvas	0.1789473717.9%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme	0.176470617.6%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt	0.17517.5%
jalview.util.Platform   jalview.util.Platform	0.174528317.5%
jalview.bin.Console   jalview.bin.Console	0.172413817.2%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter	0.1674876816.7%
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer   jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer	0.1666666716.7%
jalview.log.JLogger   jalview.log.JLogger	0.1648351716.5%
jalview.ws.dbsources.EBIAlfaFold   jalview.ws.dbsources.EBIAlfaFold	0.1604477616%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client	0.1616%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher	0.1549295815.5%
jalview.bin.Jalview   jalview.bin.Jalview	0.149819515%
jalview.fts.core.FTSRestClient   jalview.fts.core.FTSRestClient	0.1467181414.7%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter	0.1428571514.3%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges	0.1419141914.2%
jalview.gui.StructureViewer   jalview.gui.StructureViewer	0.1386138613.9%
jalview.util.StringUtils   jalview.util.StringUtils	0.1353846213.5%
jalview.util.FileUtils   jalview.util.FileUtils	0.1342756213.4%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme	0.1333333413.3%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels	0.1300345213%
jalview.gui.AlignFrame   jalview.gui.AlignFrame	0.1257613712.6%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector	0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter	0.1212%
jalview.structure.StructureCommand   jalview.structure.StructureCommand	0.1212%
jalview.util.ColorUtils   jalview.util.ColorUtils	0.1182795711.8%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient	0.11538461611.5%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader	0.11428571511.4%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper	0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty	0.1111111111.1%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour	0.1095890411%
jalview.io.FileFormat   jalview.io.FileFormat	0.1085271310.9%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j	0.10679611610.7%
jalview.datamodel.Mapping   jalview.datamodel.Mapping	0.10389610410.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix	0.1028806610.3%
jalview.ext.jmol.JmolCommands   jalview.ext.jmol.JmolCommands	0.1028037410.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile	0.10256410410.3%
jalview.bin.argparser.Arg   jalview.bin.argparser.Arg	0.099397599.9%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl	0.098639469.9%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken	0.096774199.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker	0.09523819.5%
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient   jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient	0.093759.4%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster	0.092105269.2%
com.stevesoft.pat.Or   com.stevesoft.pat.Or	0.089743599%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam	0.086956528.7%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb	0.085106388.5%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer	0.084239138.4%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher	0.0833333368.3%
jalview.structure.StructureMapping   jalview.structure.StructureMapping	0.082901558.3%
jalview.gui.StructureChooser   jalview.gui.StructureChooser	0.0817031048.2%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl	0.081081088.1%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour	0.077894747.8%
jalview.util.ChannelProperties   jalview.util.ChannelProperties	0.075862077.6%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark	0.0757.5%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti	0.0740740757.4%
jalview.gui.Desktop   jalview.gui.Desktop	0.0717539867.2%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes	0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel	0.067264576.7%
jalview.util.LaunchUtils   jalview.util.LaunchUtils	0.0661764746.6%
jalview.fts.service.pdb.PDBFTSRestClient   jalview.fts.service.pdb.PDBFTSRestClient	0.065502186.6%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt	0.06474826.5%
jalview.analysis.CrossRef   jalview.analysis.CrossRef	0.063524596.4%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel	0.0630252146.3%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry	0.0616438356.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle	0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu	0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher	0.0577777775.8%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList	0.0560747655.6%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns	0.0542452825.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer	0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes	0.0496894425%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane	0.047619054.8%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas	0.0460921864.6%
jalview.util.DBRefUtils   jalview.util.DBRefUtils	0.045317224.5%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore	0.0416666684.2%
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource   jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource	0.0390879473.9%
org.json.simple.JSONObject   org.json.simple.JSONObject	0.037735853.8%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient	0.0310559013.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences	0.027397262.7%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme	0.0254237282.5%
jalview.util.MappingUtils   jalview.util.MappingUtils	0.0237068962.4%
jalview.gui.Console   jalview.gui.Console	0.0206422022.1%
jalview.gui.structurechooser.PDBStructureChooserQuerySource   jalview.gui.structurechooser.PDBStructureChooserQuerySource	0.017751481.8%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor	0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot	0.0155642021.6%
mc_view.PDBfile   mc_view.PDBfile	0.0150375941.5%
jalview.controller.AlignViewController   jalview.controller.AlignViewController	0.0136518771.4%
jalview.gui.SeqPanel   jalview.gui.SeqPanel	0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport	0.0122699381.2%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection	0.0103092781%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher	0.0089285720.9%
jalview.datamodel.GroupSet   jalview.datamodel.GroupSet	0.008620690.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene	0.0081632650.8%
org.json.simple.JSONArray   org.json.simple.JSONArray	0.0080645160.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer	0.007547170.8%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes	0.0072463770.7%
jalview.gui.QuitHandler   jalview.gui.QuitHandler	0.00722021660.7%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr	0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties	0.00105042020.1%