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com.stevesoft.pat.patInt
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jalview.io.FormatAdapter
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jalview.bin.argparser.Arg
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com.stevesoft.pat.parsePerl
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org.json.simple.parser.Yytoken
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jalview.gui.SeqCanvas
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jalview.util.FileUtils
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jalview.util.JSONUtils
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jalview.util.ChannelProperties
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jalview.ws.dbsources.Xfam
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jalview.ws.dbsources.Pdb
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com.stevesoft.pat.RegOpt
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jalview.util.DBRefUtils
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org.json.simple.JSONObject
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jalview.util.UrlLink
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com.stevesoft.pat.RegRes
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jalview.util.MappingUtils
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mc_view.PDBfile
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jalview.io.SequenceAnnotationReport
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jalview.datamodel.ColumnSelection
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jalview.gui.SequenceFetcher
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jalview.datamodel.GroupSet
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jalview.ext.ensembl.EnsemblGene
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org.json.simple.JSONArray
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jalview.renderer.seqfeatures.FeatureRenderer
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jalview.gui.QuitHandler
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com.stevesoft.pat.CaseMgr
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jalview.schemes.ResidueProperties
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