|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.990%
|
|
|
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence
|
0.851851985.2%
|
|
|
jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
|
0.880%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.779069877.9%
|
|
|
com.stevesoft.pat.Skip2
com.stevesoft.pat.Skip2
|
0.777777877.8%
|
|
|
com.stevesoft.pat.FastBracket
com.stevesoft.pat.FastBracket
|
0.7544910375.4%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.7575%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.7428571674.3%
|
|
|
jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
|
0.687568.8%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.681818268.2%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.662566.3%
|
|
|
jalview.io.RnamlFile
jalview.io.RnamlFile
|
0.6477272564.8%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.638888963.9%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.62562.5%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.589743659%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.583333358.3%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.553956855.4%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.5454545654.5%
|
|
|
com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
|
0.550%
|
|
|
jalview.analysis.SecStrConsensus.SimpleBP
jalview.analysis.SecStrConsensus.SimpleBP
|
0.550%
|
|
|
jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
|
0.46446.4%
|
|
|
com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
|
0.4630872646.3%
|
|
|
com.stevesoft.pat.Skip
com.stevesoft.pat.Skip
|
0.4594594545.9%
|
|
|
jalview.analysis.Rna
jalview.analysis.Rna
|
0.45545.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.452054845.2%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.4398395744%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.3863636338.6%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.3853503238.5%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.3682539836.8%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.3175487531.8%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.3137531.4%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.3103448231%
|
|
|
com.stevesoft.pat.DotMulti
com.stevesoft.pat.DotMulti
|
0.2971014429.7%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.2945544429.5%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.2898550629%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
|
com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
|
0.2525%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.2428571424.3%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2370242223.7%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.2222222222.2%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.186335418.6%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.1811023718.1%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.175438617.5%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.1598639516%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.1458333314.6%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.1346534613.5%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1210191112.1%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.11538461611.5%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1086956510.9%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.098461549.8%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.09523819.5%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0930232559.3%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.090909099.1%
|
|
|
com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
|
0.08771938.8%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.081632658.2%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.0623836146.2%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.05911335.9%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.057553965.8%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0358126723.6%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.033018873.3%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0326048023.3%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.0085421410.9%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.0078781520.8%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
