|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
jalview.io.DataSourceType
jalview.io.DataSourceType
|
1.0100%
|
|
|
jalview.urls.desktop.DesktopUrlProviderFactory
jalview.urls.desktop.DesktopUrlProviderFactory
|
1.0100%
|
|
|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
|
1.0100%
|
|
|
jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.util.UserAgent
jalview.util.UserAgent
|
0.885714388.6%
|
|
|
jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
|
0.8823529588.2%
|
|
|
jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
|
0.8461538684.6%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
jalview.util.UrlConstants
jalview.util.UrlConstants
|
0.880%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.783251278.3%
|
|
|
jalview.gui.ItemsRenderer
jalview.gui.ItemsRenderer
|
0.777777877.8%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.7575%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.7575%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.7575%
|
|
|
jalview.bin.Cache.VersionChecker
jalview.bin.Cache.VersionChecker
|
0.740740774.1%
|
|
|
jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
|
0.7333333573.3%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
|
|
|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
0.7142857371.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.io.JalviewFileFilter
jalview.io.JalviewFileFilter
|
0.71296371.3%
|
|
|
jalview.gui.SplashScreen
jalview.gui.SplashScreen
|
0.701298770.1%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.696969769.7%
|
|
|
jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
|
0.687568.8%
|
|
|
jalview.log.JalviewAppender
jalview.log.JalviewAppender
|
0.666666766.7%
|
|
|
jalview.bin.argparser.Arg.Type
jalview.bin.argparser.Arg.Type
|
0.666666766.7%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.666666766.7%
|
|
|
jalview.io.BackupFilesPresetEntry
jalview.io.BackupFilesPresetEntry
|
0.661764766.2%
|
|
|
jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
|
0.657142965.7%
|
|
|
jalview.ws.dbsources.PfamSeed
jalview.ws.dbsources.PfamSeed
|
0.636363663.6%
|
|
|
jalview.datamodel.AlignmentExportData
jalview.datamodel.AlignmentExportData
|
0.62562.5%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.6162790761.6%
|
|
|
jalview.io.IntKeyStringValueEntry
jalview.io.IntKeyStringValueEntry
|
0.660%
|
|
|
jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
|
0.660%
|
|
|
jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
|
0.594202959.4%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.5959%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.581220758.1%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
|
|
jalview.jbgui.GDesktop
jalview.jbgui.GDesktop
|
0.567010356.7%
|
|
|
jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
|
0.5656%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.559523856%
|
|
|
jalview.ws.sifts.SiftsSettings
jalview.ws.sifts.SiftsSettings
|
0.555555655.6%
|
|
|
jalview.bin.ArgsParser
jalview.bin.ArgsParser
|
0.5555%
|
|
|
jalview.ws.dbsources.PfamFull
jalview.ws.dbsources.PfamFull
|
0.5384615753.8%
|
|
|
jalview.bin.argparser.ArgParser
jalview.bin.argparser.ArgParser
|
0.5203007552%
|
|
|
ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.510204151%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.4917355549.2%
|
|
|
jalview.gui.BlogReader
jalview.gui.BlogReader
|
0.483425448.3%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.4646%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.4571428645.7%
|
|
|
jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
|
0.4495412745%
|
|
|
jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
|
0.437543.8%
|
|
|
jalview.gui.APQHandlers
jalview.gui.APQHandlers
|
0.434782643.5%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.4334862543.3%
|
|
|
jalview.bin.argparser.SubVals
jalview.bin.argparser.SubVals
|
0.432989743.3%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
|
|
|
jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.4285714342.9%
|
|
|
jalview.ws.dbsources.RfamSeed
jalview.ws.dbsources.RfamSeed
|
0.4285714342.9%
|
|
|
jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
|
0.4285714342.9%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.urls.UrlProvider
jalview.urls.UrlProvider
|
0.4257425742.6%
|
|
|
jalview.util.FileUtils
jalview.util.FileUtils
|
0.424731242.5%
|
|
|
jalview.io.FileLoader
jalview.io.FileLoader
|
0.418060241.8%
|
|
|
jalview.bin.argparser.ArgValue
jalview.bin.argparser.ArgValue
|
0.4179104641.8%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.4134615441.3%
|
|
|
jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
|
0.412541.2%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.410714341.1%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.4072727340.7%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.404761940.5%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.3949044639.5%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.3925619739.3%
|
|
|
jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
|
0.3924050639.2%
|
|
|
jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.384615438.5%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.384615438.5%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3835616438.4%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.3684210536.8%
|
|
|
jalview.urls.UrlProviderImpl
jalview.urls.UrlProviderImpl
|
0.3658536736.6%
|
|
|
jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
|
0.3636%
|
|
|
jalview.util.ErrorLog
jalview.util.ErrorLog
|
0.352941235.3%
|
|
|
jalview.gui.UserQuestionnaireCheck
jalview.gui.UserQuestionnaireCheck
|
0.349397634.9%
|
|
|
jalview.bin.argparser.ArgValues
jalview.bin.argparser.ArgValues
|
0.3412698534.1%
|
|
|
jalview.bin.argparser.Arg.Opt
jalview.bin.argparser.Arg.Opt
|
0.3333333433.3%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.3289473732.9%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.326266232.6%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.3242187532.4%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.3209109632.1%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.3201320232%
|
|
|
jalview.bin.argparser.ArgValuesMap
jalview.bin.argparser.ArgValuesMap
|
0.317848431.8%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.315315331.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3149606331.5%
|
|
|
jalview.bin.Commands
jalview.bin.Commands
|
0.314791431.5%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.312785431.3%
|
|
|
jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
|
0.3095238231%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.2995049430%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.299319729.9%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.2943840629.4%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.286908128.7%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.285714328.6%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.28452228.5%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2803738428%
|
|
|
jalview.util.UrlLink
jalview.util.UrlLink
|
0.2803030328%
|
|
|
jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.279365127.9%
|
|
|
jalview.util.Log4j
jalview.util.Log4j
|
0.2727272827.3%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.2714285927.1%
|
|
|
jalview.util.ChannelProperties
jalview.util.ChannelProperties
|
0.268965526.9%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.2662454826.6%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.2637362826.4%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.2564102725.6%
|
|
|
jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
|
0.2525%
|
|
|
jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
|
0.2525%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.2491228124.9%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.2489451524.9%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.2464788724.6%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.2454545524.5%
|
|
|
jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
|
0.2425068224.3%
|
|
|
jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.2424%
|
|
|
jalview.io.BackupFiles
jalview.io.BackupFiles
|
0.23623.6%
|
|
|
jalview.bin.BuildDetails
jalview.bin.BuildDetails
|
0.2352941223.5%
|
|
|
jalview.datamodel.AlignExportSettingsAdapter
jalview.datamodel.AlignExportSettingsAdapter
|
0.2307692323.1%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
|
|
|
jalview.io.FormatAdapter
jalview.io.FormatAdapter
|
0.2222%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.2152619721.5%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.2116788321.2%
|
|
|
jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
|
0.2083333320.8%
|
|
|
jalview.urls.UrlLinkDisplay
jalview.urls.UrlLinkDisplay
|
0.2051282120.5%
|
|
|
jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
|
0.203883520.4%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.2019704420.2%
|
|
|
jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
|
0.220%
|
|
|
jalview.bin.JalviewTaskbar
jalview.bin.JalviewTaskbar
|
0.220%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.1956521719.6%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.1944764119.4%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.1818181918.2%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
|
|
|
jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
|
0.1739130517.4%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.1723076917.2%
|
|
|
jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
|
0.1722772317.2%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1703910717%
|
|
|
jalview.urls.UrlLinkTableModel
jalview.urls.UrlLinkTableModel
|
0.1686746916.9%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1674876816.7%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.1666666716.7%
|
|
|
jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
|
0.1666666716.7%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.1650943516.5%
|
|
|
jalview.bin.argparser.Arg
jalview.bin.argparser.Arg
|
0.162650616.3%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.1598639516%
|
|
|
jalview.util.QuickSort
jalview.util.QuickSort
|
0.1585760615.9%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.15693315.7%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1550387615.5%
|
|
|
jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
|
0.1511111115.1%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.148437514.8%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.1292016812.9%
|
|
|
jalview.ws.dbsources.Rfam
jalview.ws.dbsources.Rfam
|
0.12512.5%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.11428571511.4%
|
|
|
jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
|
0.1136363711.4%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.1003460210%
|
|
|
jalview.io.StockholmFile
jalview.io.StockholmFile
|
0.098930489.9%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
com.stevesoft.pat.Start
com.stevesoft.pat.Start
|
0.090909099.1%
|
|
|
jalview.util.LaunchUtils
jalview.util.LaunchUtils
|
0.090686289.1%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.089743599%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0888.8%
|
|
|
jalview.ws.dbsources.Pfam
jalview.ws.dbsources.Pfam
|
0.086956528.7%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.0860215058.6%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.081300818.1%
|
|
|
jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
|
0.081081088.1%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.088%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.07515037.5%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.0757.5%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.069672137%
|
|
|
com.stevesoft.pat.End
com.stevesoft.pat.End
|
0.068965526.9%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.063829796.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0560747655.6%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.045317224.5%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.043478264.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.040094344%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.ws.jws1.SeqSearchWSClient
jalview.ws.jws1.SeqSearchWSClient
|
0.029629633%
|
|
|
jalview.ext.ensembl.EnsemblRestClient
jalview.ext.ensembl.EnsemblRestClient
|
0.0283018872.8%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.gui.AlignExportOptions
jalview.gui.AlignExportOptions
|
0.026315792.6%
|
|
|
jalview.ws.jws1.MsaWSClient
jalview.ws.jws1.MsaWSClient
|
0.026315792.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0233463032.3%
|
|
|
jalview.gui.Preferences
jalview.gui.Preferences
|
0.018678161.9%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.016326531.6%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0133928571.3%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0072463770.7%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
|
jalview.ext.ensembl.EnsemblSeqProxy
jalview.ext.ensembl.EnsemblSeqProxy
|
0.00584795330.6%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
