|
com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
|
1.0100%
|
|
|
com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
|
0.8461538684.6%
|
|
|
mc_view.Residue
mc_view.Residue
|
0.8461538684.6%
|
|
|
mc_view.Atom
mc_view.Atom
|
0.794871879.5%
|
|
|
mc_view.PDBfile
mc_view.PDBfile
|
0.6691729466.9%
|
|
|
jalview.io.StructureFile
jalview.io.StructureFile
|
0.6558139365.6%
|
|
|
jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
|
0.571428657.1%
|
|
|
jalview.ext.jmol.JmolParser
jalview.ext.jmol.JmolParser
|
0.5493333354.9%
|
|
|
com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
|
0.523255852.3%
|
|
|
com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
|
0.550%
|
|
|
mc_view.Bond
mc_view.Bond
|
0.550%
|
|
|
com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
|
0.550%
|
|
|
com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
|
0.4571428645.7%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.datamodel.DBRefEntry
jalview.datamodel.DBRefEntry
|
0.3972602839.7%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.3910256339.1%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3904109639%
|
|
|
mc_view.PDBChain
mc_view.PDBChain
|
0.3269230732.7%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3188976331.9%
|
|
|
jalview.datamodel.PDBEntry.Type
jalview.datamodel.PDBEntry.Type
|
0.312531.2%
|
|
|
jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
|
0.282051328.2%
|
|
|
com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
|
0.2708333427.1%
|
|
|
com.stevesoft.pat.Or
com.stevesoft.pat.Or
|
0.2692307826.9%
|
|
|
com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
|
0.250909125.1%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2422145324.2%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2395543224%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
com.stevesoft.pat.Range
com.stevesoft.pat.Range
|
0.2272727322.7%
|
|
|
com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
|
0.22522.5%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.2236024922.4%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.220543822.1%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.2180685421.8%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.2134831421.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.191082819.1%
|
|
|
com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
|
0.17517.5%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.1601731616%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.1428571514.3%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.1346153913.5%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.1258992912.6%
|
|
|
jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
|
0.10434782510.4%
|
|
|
com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
|
0.098639469.9%
|
|
|
jalview.util.CaseInsensitiveString
jalview.util.CaseInsensitiveString
|
0.086956528.7%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
|
0.0740740757.4%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
com.stevesoft.pat.RegOpt
com.stevesoft.pat.RegOpt
|
0.06474826.5%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.063314716.3%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0576131685.8%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0492610824.9%
|
|
|
com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
|
0.0289855082.9%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.util.MappingUtils
jalview.util.MappingUtils
|
0.0237068962.4%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0094339620.9%
|
|
|
jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
|
0.0040404040.4%
|
|
|
jalview.schemes.ResidueProperties
jalview.schemes.ResidueProperties
|
0.00315126050.3%
|
|
|
com.stevesoft.pat.CaseMgr
com.stevesoft.pat.CaseMgr
|
0.00278551530.3%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.00235849060.2%
|
|
