jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.datamodel.HiddenCursorPosition
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jalview.io.FastaFile
jalview.io.FastaFile
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jalview.io.AlignFile
jalview.io.AlignFile
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jalview.util.Comparison
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jalview.gui.AlignViewport
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jalview.util.MessageManager
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jalview.io.FormatAdapter
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jalview.viewmodel.styles.ViewStyle
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jalview.io.FileParse
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.viewmodel.AlignmentViewport
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jalview.log.JLogger
jalview.log.JLogger
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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jalview.datamodel.AlignedCodonFrame
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jalview.bin.Console
jalview.bin.Console
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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jalview.bin.Cache
jalview.bin.Cache
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jalview.util.MapList
jalview.util.MapList
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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jalview.datamodel.Mapping
jalview.datamodel.Mapping
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jalview.io.FileFormat
jalview.io.FileFormat
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jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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jalview.util.Platform
jalview.util.Platform
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jalview.util.MappingUtils
jalview.util.MappingUtils
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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jalview.gui.SequenceFetcher
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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