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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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1.0100%
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jalview.schemes.TaylorColourScheme
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1.0100%
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jalview.schemes.FlowerColourScheme
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1.0100%
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jalview.schemes.ZappoColourScheme
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1.0100%
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jalview.schemes.NucleotideAmbiguityColourScheme
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1.0100%
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1.0100%
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jalview.schemes.PurinePyrimidineColourScheme
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1.0100%
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jalview.schemes.NucleotideColourScheme
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1.0100%
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jalview.schemes.BlossomColourScheme
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1.0100%
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1.0100%
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1.0100%
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1.0100%
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jalview.schemes.ClustalxColourScheme.ConsensusColour
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1.0100%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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jalview.analysis.Conservation
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jalview.io.BioJsHTMLOutput
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jalview.gui.JalviewChangeSupport
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jalview.viewmodel.ViewportProperties
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jalview.schemes.Consensus
jalview.schemes.Consensus
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jalview.ws.utils.UrlDownloadClient
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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jalview.workers.AlignCalcManager
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jalview.io.FileFormats
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jalview.analysis.AAFrequency
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org.json.simple.parser.JSONParser
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jalview.ws.dbsources.EmblCdsSource
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ext.vamsas.ServiceHandle
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jalview.io.IdentifyFile
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jalview.ws.jws1.Discoverer
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jalview.gui.PaintRefresher
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jalview.util.HttpUtils
jalview.util.HttpUtils
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jalview.log.JalviewAppender
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jalview.gui.PromptUserConfig
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jalview.io.JalviewFileChooser
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jalview.io.FileParse
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jalview.gui.Desktop.MyDesktopManager
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jalview.gui.JvSwingUtils
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jalview.util.Format
jalview.util.Format
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jalview.gui.Desktop.MyDesktopPane
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jalview.io.FormatAdapter
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.io.FileFormat
jalview.io.FileFormat
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jalview.bin.Console
jalview.bin.Console
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0.1034482810.3%
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jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.0977508659.8%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.util.ChannelProperties
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jalview.gui.AlignFrame
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jalview.util.JSONUtils
jalview.util.JSONUtils
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.gui.Console
jalview.gui.Console
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jalview.gui.ProgressBar
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0.081300818.1%
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jalview.datamodel.AlignmentAnnotation
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0.079900128%
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jalview.urls.UrlProvider
jalview.urls.UrlProvider
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jalview.util.Platform
jalview.util.Platform
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jalview.log.JLogger
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jalview.gui.IdwidthAdjuster
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0600255436%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.urls.CustomUrlProvider
jalview.urls.CustomUrlProvider
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jalview.renderer.ResidueShader
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jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.gui.AnnotationPanel
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jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045317224.5%
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jalview.ws.dbsources.Pdb
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jalview.bin.Cache
jalview.bin.Cache
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0.0413223134.1%
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jalview.util.UrlLink
jalview.util.UrlLink
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0.037878793.8%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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0.037735853.8%
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jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.urls.IdentifiersUrlProvider
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.0245614032.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.02343752.3%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.021538462.2%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0172651931.7%
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0135593221.4%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.0127388541.3%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0126353791.3%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125082291.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.0108932461.1%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.009132420.9%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.0082644620.8%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
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0.0081632650.8%
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org.json.simple.JSONArray
org.json.simple.JSONArray
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0.0080645160.8%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.0080160320.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.0077519380.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0070754720.7%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.00343642620.3%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.00127518490.1%
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