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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.schemes.ZappoColourScheme
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1.0100%
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jalview.gui.ProgressPanel
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.871921287.2%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
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0.8571428785.7%
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com.stevesoft.pat.OrMark
com.stevesoft.pat.OrMark
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0.8585%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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jalview.datamodel.VisibleRowsCollection
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0.833333383.3%
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jalview.datamodel.Profiles
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.823529482.4%
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com.stevesoft.pat.SubMark
com.stevesoft.pat.SubMark
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0.880%
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jalview.datamodel.VisibleColsCollection
jalview.datamodel.VisibleColsCollection
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0.880%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.7857142778.6%
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jalview.renderer.OverviewResColourFinder
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0.756756875.7%
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jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.7377049373.8%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
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0.736842173.7%
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jalview.workers.SecondaryStructureConsensusThread
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0.7333333573.3%
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jalview.datamodel.RangeElementsIterator
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.770%
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jalview.datamodel.VisibleRowsIterator
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0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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jalview.ws.SequenceFetcher
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jalview.renderer.OverviewRenderer
jalview.renderer.OverviewRenderer
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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com.stevesoft.pat.wrap.StringWrap
com.stevesoft.pat.wrap.StringWrap
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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0.6162790761.6%
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
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jalview.analysis.SequenceIdMatcher.SeqIdName
jalview.analysis.SequenceIdMatcher.SeqIdName
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jalview.workers.AlignCalcManager
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jalview.renderer.ResidueColourFinder
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jalview.util.ParseHtmlBodyAndLinks
jalview.util.ParseHtmlBodyAndLinks
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jalview.gui.TreePanel.TreeLoader
jalview.gui.TreePanel.TreeLoader
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0.589743659%
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jalview.jbgui.GTreePanel
jalview.jbgui.GTreePanel
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0.587301658.7%
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jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
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0.583333358.3%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.57354357.4%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.568965556.9%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.5656%
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com.stevesoft.pat.Boundary
com.stevesoft.pat.Boundary
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0.518518551.9%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.550%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.550%
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com.stevesoft.pat.FastChar
com.stevesoft.pat.FastChar
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0.550%
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com.stevesoft.pat.FastMulti
com.stevesoft.pat.FastMulti
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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0.550%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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0.550%
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jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
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0.550%
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jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.4930555549.3%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4855769348.6%
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jalview.datamodel.BinaryNode
jalview.datamodel.BinaryNode
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0.4833333248.3%
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jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
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0.4803921648%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.4773662747.7%
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jalview.xml.binding.jalview.JalviewModel.JGroup
jalview.xml.binding.jalview.JalviewModel.JGroup
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0.476562547.7%
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jalview.xml.binding.jalview.JalviewModel.Tree
jalview.xml.binding.jalview.JalviewModel.Tree
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0.4761904847.6%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.4761904847.6%
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com.stevesoft.pat.parsePerl
com.stevesoft.pat.parsePerl
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0.448979644.9%
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jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
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0.4310344843.1%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.analysis.SequenceIdMatcher
jalview.analysis.SequenceIdMatcher
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0.412280741.2%
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jalview.gui.OverviewPanel
jalview.gui.OverviewPanel
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0.411764741.2%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.410526341.1%
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com.stevesoft.pat.Or
com.stevesoft.pat.Or
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0.4102564241%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.3973214339.7%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3823529538.2%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3745454537.5%
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jalview.analysis.TreeModel
jalview.analysis.TreeModel
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0.3740157537.4%
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jalview.io.NewickFile
jalview.io.NewickFile
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0.3672055336.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3639575836.4%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3531353235.3%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.3515981735.2%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.ws.jws2.MsaWSClient
jalview.ws.jws2.MsaWSClient
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0.348993334.9%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.3475609734.8%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.3333333433.3%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.3245454432.5%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3143812731.4%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.302631630.3%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2727272827.3%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.258899725.9%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.253521125.4%
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com.stevesoft.pat.NullPattern
com.stevesoft.pat.NullPattern
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0.2525%
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com.stevesoft.pat.StringRule
com.stevesoft.pat.StringRule
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.2525%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.2456140424.6%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.2424%
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com.stevesoft.pat.RegRes
com.stevesoft.pat.RegRes
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0.2391304423.9%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
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0.2340425623.4%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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jalview.datamodel.SequenceNode
jalview.datamodel.SequenceNode
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0.2307692323.1%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.226562522.7%
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jalview.io.FileParse
jalview.io.FileParse
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0.2144846821.4%
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jalview.viewmodel.OverviewDimensionsHideHidden
jalview.viewmodel.OverviewDimensionsHideHidden
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0.211267621.1%
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jalview.gui.TreePanel
jalview.gui.TreePanel
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0.2099125421%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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0.2068965620.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.2004357320%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.220%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.1973986219.7%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.1913827719.1%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1822660118.2%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1815642418.2%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1723076917.2%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.1650793716.5%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.1647940116.5%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.163969816.4%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.1615168616.2%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.1428571514.3%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.1425742514.3%
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com.stevesoft.pat.Branch
com.stevesoft.pat.Branch
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0.140939614.1%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1381856513.8%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.1174968111.7%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.1038062310.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.1028806610.3%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.10102156510.1%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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com.stevesoft.pat.ReplaceRule
com.stevesoft.pat.ReplaceRule
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0.08771938.8%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ws.jws2.Jws2Client
jalview.ws.jws2.Jws2Client
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0.0843373468.4%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.082191788.2%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.bin.Console
jalview.bin.Console
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0.078817737.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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