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Coverage Report

Test testRnamlToStockholmIO

Test
testRnamlToStockholmIO 1PASS 6 Dec 13:48:46 0.078
 
testRnamlToStockholmIO
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
com.stevesoft.pat.FastChar   com.stevesoft.pat.FastChar 1.0100%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.990%
jalview.datamodel.AlignmentAnnotation.AnnotCharSequence   jalview.datamodel.AlignmentAnnotation.AnnotCharSequence 0.851851985.2%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.880%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.779069877.9%
com.stevesoft.pat.Skip2   com.stevesoft.pat.Skip2 0.777777877.8%
com.stevesoft.pat.FastBracket   com.stevesoft.pat.FastBracket 0.7544910375.4%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.7575%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.7428571674.3%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.681818268.2%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.662566.3%
jalview.io.RnamlFile   jalview.io.RnamlFile 0.6477272564.8%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.638888963.9%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.62562.5%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.589743659%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.583333358.3%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.553956855.4%
com.stevesoft.pat.Start   com.stevesoft.pat.Start 0.5454545654.5%
com.stevesoft.pat.NullPattern   com.stevesoft.pat.NullPattern 0.550%
jalview.analysis.SecStrConsensus.SimpleBP   jalview.analysis.SecStrConsensus.SimpleBP 0.550%
com.stevesoft.pat.Branch   com.stevesoft.pat.Branch 0.4630872646.3%
com.stevesoft.pat.Skip   com.stevesoft.pat.Skip 0.4594594545.9%
jalview.analysis.Rna   jalview.analysis.Rna 0.45545.5%
jalview.io.AlignFile   jalview.io.AlignFile 0.452054845.2%
jalview.io.StockholmFile   jalview.io.StockholmFile 0.4398395744%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.3863636338.6%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.3682539836.8%
jalview.io.FileParse   jalview.io.FileParse 0.3175487531.8%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.3121098631.2%
com.stevesoft.pat.End   com.stevesoft.pat.End 0.3103448231%
com.stevesoft.pat.DotMulti   com.stevesoft.pat.DotMulti 0.2971014429.7%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.2898550629%
com.stevesoft.pat.StringRule   com.stevesoft.pat.StringRule 0.2525%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.2428571424.3%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2370242223.7%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.util.Format   jalview.util.Format 0.186335418.6%
jalview.util.Comparison   jalview.util.Comparison 0.1811023718.1%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.1598639516%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.1210191112.1%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.1086956510.9%
com.stevesoft.pat.ReplaceRule   com.stevesoft.pat.ReplaceRule 0.08771938.8%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.0623836146.2%
jalview.io.FileFormat   jalview.io.FileFormat 0.0620155046.2%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.057553965.8%
jalview.bin.Console   jalview.bin.Console 0.0492610824.9%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.util.Platform   jalview.util.Platform 0.0094339620.9%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.009132420.9%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.0078781520.8%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.00235849060.2%