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jalview.io.DataSourceType
jalview.io.DataSourceType
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jalview.datamodel.ResidueCount.SymbolCounts
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jalview.jbgui.GAlignmentPanel
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jalview.io.JalviewFileChooser.RecentlyOpened
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jalview.gui.SplashScreen.SplashImage
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jalview.analysis.Conservation
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jalview.json.binding.biojs.BioJSReleasePojo
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jalview.datamodel.Profiles
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jalview.gui.ItemsRenderer
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.workers.ConsensusThread
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jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.datamodel.Profile
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jalview.gui.JalviewDialog
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jalview.io.FastaFile
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jalview.util.ParseHtmlBodyAndLinks
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jalview.schemes.OceanColourScheme
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jalview.io.FileLoader
jalview.io.FileLoader
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jalview.ws.utils.UrlDownloadClient
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.gui.SplashScreen
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jalview.io.AlignFile
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.analysis.AAFrequency
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jalview.analysis.SeqsetUtils
jalview.analysis.SeqsetUtils
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jalview.viewmodel.ViewportRanges
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jalview.datamodel.CigarArray
jalview.datamodel.CigarArray
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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jalview.gui.AlignmentPanel
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jalview.io.FileParse
jalview.io.FileParse
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0.286908128.7%
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jalview.datamodel.CigarBase
jalview.datamodel.CigarBase
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jalview.renderer.ResidueColourFinder
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.gui.IdCanvas
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.datamodel.SeqCigar
jalview.datamodel.SeqCigar
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jalview.viewmodel.AlignmentViewport
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jalview.gui.JalviewChangeSupport
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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jalview.ws.jws2.JabaPreset
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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jalview.datamodel.Sequence
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jalview.gui.BlogReader.LaunchJvBrowserOnItem
jalview.gui.BlogReader.LaunchJvBrowserOnItem
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jalview.io.JalviewFileChooser
jalview.io.JalviewFileChooser
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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jalview.gui.SeqCanvas
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jalview.analysis.AnnotationSorter
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jalview.util.HttpUtils
jalview.util.HttpUtils
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jalview.util.Format
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jalview.datamodel.Alignment
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jalview.log.JLogger
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jalview.gui.Desktop.MyDesktopPane
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jalview.gui.PaintRefresher
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jalview.bin.Console
jalview.bin.Console
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jalview.io.FileFormat
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jalview.datamodel.AlignmentView
jalview.datamodel.AlignmentView
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jalview.datamodel.features.SequenceFeatures
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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jalview.gui.JvSwingUtils
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jalview.analysis.scoremodels.ScoreModels
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jalview.gui.Desktop.MyDesktopManager
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jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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jalview.log.JLoggerLog4j
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jalview.datamodel.AlignmentView.ScGroup
jalview.datamodel.AlignmentView.ScGroup
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0.1052631610.5%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.datamodel.SequenceGroup
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jalview.util.JSONUtils
jalview.util.JSONUtils
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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jalview.gui.AlignFrame
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0.0763009867.6%
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jalview.gui.Desktop
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0.0754824067.5%
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jalview.util.Platform
jalview.util.Platform
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0.0707547147.1%
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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jalview.bin.Cache
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jalview.analysis.scoremodels.ScoreMatrix
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jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.datamodel.ColumnSelection.IntList
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0.0560747655.6%
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jalview.ws.jws2.Jws2Discoverer
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jalview.renderer.ResidueShader
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jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.gui.WsParamSetManager
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0.0429447854.3%
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.037735853.8%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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jalview.util.StringUtils
jalview.util.StringUtils
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.0241691842.4%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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jalview.schemes.ClustalxColourScheme
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jalview.datamodel.HiddenColumnsCursor
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jalview.controller.AlignViewController
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jalview.datamodel.SearchResults
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jalview.analysis.AlignSeq
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jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
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jalview.datamodel.ColumnSelection
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jalview.bin.Jalview
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jalview.bin.argparser.BootstrapArgs
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org.json.simple.JSONArray
org.json.simple.JSONArray
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
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0.0077519380.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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