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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
|
0.869565287%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.833333383.3%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.807881880.8%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.7575%
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jalview.workers.SecondaryStructureConsensusThread
jalview.workers.SecondaryStructureConsensusThread
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0.7333333573.3%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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jalview.ws.SequenceFetcher
jalview.ws.SequenceFetcher
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0.678571467.9%
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jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
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0.675675767.6%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.672131167.2%
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jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
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0.57354357.4%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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0.568965556.9%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
|
0.5057471450.6%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.4218181742.2%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.util.SparseCount
jalview.util.SparseCount
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.380952438.1%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.3636%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.356164435.6%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3511705735.1%
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jalview.util.Comparison
jalview.util.Comparison
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0.3307086533.1%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.3239436732.4%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3189300331.9%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.315315331.5%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3135313431.4%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.30797130.8%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.299065429.9%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.2885747828.9%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
|
0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.2853881428.5%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
|
0.279365127.9%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.2708333427.1%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.2695312527%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2453371624.5%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2272727322.7%
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jalview.ext.android.SparseShortArray
jalview.ext.android.SparseShortArray
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0.225988722.6%
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jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
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0.215909121.6%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.io.FileParse
jalview.io.FileParse
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0.164345416.4%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
|
0.1616%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.1496598615%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1312849213.1%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.1297169813%
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jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
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0.126404512.6%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1219512212.2%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
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0.1134020611.3%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.ext.android.ContainerHelpers
jalview.ext.android.ContainerHelpers
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0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.util.Platform
jalview.util.Platform
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0.10849056410.8%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.099156129.9%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.0977508659.8%
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jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.096774199.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.079207927.9%
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jalview.bin.Console
jalview.bin.Console
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0.078817737.9%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.077403257.7%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.070175447%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.06923956.9%
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jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
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jalview.io.JalviewFileChooser.RecentlyOpened
jalview.io.JalviewFileChooser.RecentlyOpened
|
0.066666676.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.0657894766.6%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
|
0.061224496.1%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.057932855.8%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.052631585.3%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.0517799375.2%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
|
0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.047619054.8%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045317224.5%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0421455954.2%
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jalview.bin.Cache
jalview.bin.Cache
|
0.0385674953.9%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.027397262.7%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0270541092.7%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.0238095242.4%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.021538462.2%
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jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
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0.0172651931.7%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0155642021.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.0144230771.4%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.0127388541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0108932461.1%
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jalview.bin.Jalview
jalview.bin.Jalview
|
0.0099277981%
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jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
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jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0077519380.8%
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jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
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0.007547170.8%
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jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
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0.00357142860.4%
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