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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean
jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcherSet
jalview.xml.binding.jalview.FeatureMatcherSet
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
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1.0100%
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jalview.xml.binding.jalview.JalviewUserColours.Filter
jalview.xml.binding.jalview.JalviewUserColours.Filter
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcher
jalview.xml.binding.jalview.FeatureMatcher
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.xml.binding.jalview.JalviewUserColours.Colour
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0.9696%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.viewmodel.styles.ViewStyle
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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jalview.datamodel.Profiles
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jalview.analysis.Conservation
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jalview.util.LinkedIdentityHashSet
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.xml.binding.jalview.JalviewUserColours
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0.770%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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jalview.ws.SequenceFetcher
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jalview.datamodel.Profile
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.util.matcher.Condition
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0.550%
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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0.550%
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jalview.schemes.OceanColourScheme
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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jalview.gui.SplashScreen
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jalview.io.BioJsHTMLOutput
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jalview.gui.FeatureSettings
jalview.gui.FeatureSettings
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jalview.gui.ColourMenuHelper
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jalview.ws.utils.UrlDownloadClient
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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jalview.io.FileFormats
jalview.io.FileFormats
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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jalview.schemes.HydrophobicColourScheme
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jalview.schemes.BuriedColourScheme
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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jalview.workers.AlignCalcManager
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jalview.io.AlignFile
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3511705735.1%
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0.3418181834.2%
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jalview.datamodel.features.FeatureAttributes
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jalview.datamodel.features.SequenceFeatures
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jalview.analysis.AAFrequency
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jalview.util.Comparison
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jalview.ws.rest.RestServiceDescription
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jalview.datamodel.features.FeatureMatcher
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jalview.io.FileParse
jalview.io.FileParse
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0.2952646329.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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jalview.gui.FeatureSettings.FeatureTableModel
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jalview.schemes.JalviewColourScheme
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jalview.datamodel.features.FeatureMatcherSet
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jalview.gui.AlignmentPanel
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jalview.viewmodel.ViewportRanges
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jalview.io.JalviewFileFilter
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.schemes.FeatureColour
jalview.schemes.FeatureColour
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jalview.ws.rest.InputType
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jalview.util.Format
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0.190476219%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.schemes.IdColourScheme
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jalview.datamodel.SequenceFeature
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jalview.analysis.AnnotationSorter
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jalview.ws.jws1.WS1Client
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jalview.schemes.TCoffeeColourScheme
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jalview.ws.jws2.JabaParamStore
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jalview.log.JLogger
jalview.log.JLogger
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jalview.gui.Desktop.MyDesktopPane
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jalview.gui.FeatureSettings.FilterRenderer
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jalview.gui.PaintRefresher
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jalview.gui.FeatureSettings.ColorRenderer
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0.1333333413.3%
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jalview.bin.Console
jalview.bin.Console
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0.1330049213.3%
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jalview.util.matcher.Matcher
jalview.util.matcher.Matcher
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0.1304347813%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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jalview.ws.rest.params.SeqGroupIndexVector
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jalview.gui.AlignFrame
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.ws.rest.RestClient
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jalview.datamodel.Annotation
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jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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jalview.schemes.ColourSchemeProperty
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jalview.io.FileFormat
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.1049943310.5%
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jalview.gui.FeatureSettings.FilterEditor
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0.10416666410.4%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.10355987410.4%
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jalview.ws.rest.params.AnnotationFile
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jalview.io.AppletFormatAdapter
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0.0993788849.9%
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org.json.simple.parser.Yytoken
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jalview.util.ColorUtils
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jalview.workers.AlignCalcWorker
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jalview.util.JSONUtils
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jalview.ws.dbsources.Xfam
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jalview.ws.jws2.Jws2Client
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.gui.Console
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jalview.schemes.RNAHelicesColour
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jalview.gui.ProgressBar
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jalview.datamodel.AlignmentAnnotation
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jalview.gui.FeatureSettings.ColorEditor
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0.0714285757.1%
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jalview.util.Platform
jalview.util.Platform
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jalview.schemes.ColourSchemes
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jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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jalview.gui.IdwidthAdjuster
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jalview.analysis.CrossRef
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jalview.analysis.scoremodels.ScoreMatrix
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ext.vamsas.ServiceHandle
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jalview.ws.jws1.Discoverer
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jalview.analysis.GeneticCodes
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jalview.datamodel.SecondaryStructureCount
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jalview.util.DBRefUtils
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jalview.gui.AnnotationPanel
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jalview.gui.WsParamSetManager
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jalview.ws.dbsources.Pdb
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jalview.bin.Cache
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jalview.project.Jalview2XML
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.datamodel.ColumnSelection.IntList
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jalview.structure.StructureSelectionManager
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jalview.ws.jws1.JPredClient
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.0245614032.5%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.02343752.3%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0172651931.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0135593221.4%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125082291.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.0108932461.1%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.010020041%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0099277981%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.009132420.9%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0077519380.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0070754720.7%
|
|
|
jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.0065359480.7%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00357142860.4%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
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