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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean
jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcherSet
jalview.xml.binding.jalview.FeatureMatcherSet
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
jalview.xml.binding.jalview.FeatureMatcherSet.CompoundMatcher
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1.0100%
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jalview.xml.binding.jalview.JalviewUserColours.Filter
jalview.xml.binding.jalview.JalviewUserColours.Filter
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1.0100%
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jalview.xml.binding.jalview.FeatureMatcher
jalview.xml.binding.jalview.FeatureMatcher
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.xml.binding.jalview.JalviewUserColours.Colour
jalview.xml.binding.jalview.JalviewUserColours.Colour
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0.9696%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.gui.SplashScreen.SplashImage
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0.8823529588.2%
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jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.858695685.9%
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jalview.json.binding.biojs.BioJSReleasePojo
jalview.json.binding.biojs.BioJSReleasePojo
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0.8461538684.6%
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jalview.datamodel.Profiles
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0.833333383.3%
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jalview.util.UrlConstants
jalview.util.UrlConstants
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0.880%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.7783251477.8%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.workers.SecondaryStructureConsensusThread
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jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.xml.binding.jalview.JalviewUserColours
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0.770%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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0.696969769.7%
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jalview.json.binding.biojs.BioJSRepositoryPojo
jalview.json.binding.biojs.BioJSRepositoryPojo
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0.687568.8%
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jalview.ws.SequenceFetcher
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0.678571467.9%
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jalview.datamodel.Profile
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jalview.gui.SplashScreen
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jalview.util.matcher.Condition
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jalview.util.ParseHtmlBodyAndLinks
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jalview.jbgui.GAlignFrame
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jalview.ws.jws2.JabaWsServerQuery
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jalview.workers.AlignCalcManager
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jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.io.BioJsHTMLOutput
jalview.io.BioJsHTMLOutput
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0.46446.4%
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jalview.gui.FeatureSettings
jalview.gui.FeatureSettings
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0.4593596245.9%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.ws.utils.UrlDownloadClient
jalview.ws.utils.UrlDownloadClient
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jalview.datamodel.HiddenCursorPosition
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jalview.schemes.ResidueColourScheme
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.4134615441.3%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.3853503238.5%
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jalview.renderer.ScaleRenderer
jalview.renderer.ScaleRenderer
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0.3636%
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jalview.util.MessageManager
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0.3571428735.7%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.356164435.6%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.3536776335.4%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.3511705735.1%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.3418181834.2%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.3410852834.1%
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jalview.datamodel.features.SequenceFeatures
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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jalview.util.Comparison
jalview.util.Comparison
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jalview.io.FastaFile
jalview.io.FastaFile
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0.315315331.5%
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jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.3141025631.4%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3003533530%
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jalview.datamodel.features.FeatureMatcher
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jalview.viewmodel.ViewportRanges
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0.297029729.7%
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jalview.io.FileParse
jalview.io.FileParse
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0.2952646329.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.2945544429.5%
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jalview.gui.FeatureSettings.FeatureTableModel
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0.2941176629.4%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.285714328.6%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.gui.AlignViewport
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0.2853881428.5%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.2666666826.7%
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jalview.datamodel.features.FeatureMatcherSet
jalview.datamodel.features.FeatureMatcherSet
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0.2661870426.6%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2653061226.5%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.255865125.6%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2507552825.1%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2272727322.7%
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jalview.io.JalviewFileFilter
jalview.io.JalviewFileFilter
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0.226415122.6%
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jalview.renderer.AnnotationRenderer
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0.2223214422.2%
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jalview.gui.PromptUserConfig
jalview.gui.PromptUserConfig
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0.215909121.6%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2156862821.6%
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jalview.schemes.FeatureColour
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jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.util.Format
jalview.util.Format
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0.190476219%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1889502718.9%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
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jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.datamodel.SequenceFeature
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0.1690647516.9%
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jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.1562515.6%
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jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
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jalview.gui.FeatureSettings.FilterRenderer
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.142458114.2%
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jalview.gui.PaintRefresher
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0.1408450814.1%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.gui.FeatureSettings.ColorRenderer
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0.1333333413.3%
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jalview.bin.Console
jalview.bin.Console
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0.1330049213.3%
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jalview.util.matcher.Matcher
jalview.util.matcher.Matcher
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0.1304347813%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1212%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1178332711.8%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.112372311.2%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1111111111.1%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.schemes.ColourSchemeProperty
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0.1111111111.1%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.11003236511%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.gui.FeatureSettings.FilterEditor
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0.10416666410.4%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
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0.096774199.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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jalview.util.ChannelProperties
jalview.util.ChannelProperties
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0.0965517249.7%
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jalview.workers.AlignCalcWorker
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.093186379.3%
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jalview.util.JSONUtils
jalview.util.JSONUtils
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0.090909099.1%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.datamodel.AlignmentAnnotation
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0.082397018.2%
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jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
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0.081300818.1%
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jalview.urls.UrlProvider
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0.079207927.9%
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jalview.gui.FeatureSettings.ColorEditor
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0.0714285757.1%
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jalview.util.Platform
jalview.util.Platform
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jalview.schemes.ColourSchemes
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0.070175447%
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jalview.gui.IdPanel
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jalview.io.JalviewFileChooser.RecentlyOpened
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jalview.schemes.PIDColourScheme
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.065346536.5%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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jalview.urls.CustomUrlProvider
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0.0569620245.7%
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jalview.datamodel.ColumnSelection.IntList
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jalview.renderer.ResidueShader
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.045317224.5%
|
|
|
jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
|
0.0429447854.3%
|
|
|
jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
|
0.042553194.3%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0413223134.1%
|
|
|
jalview.project.Jalview2XML
jalview.project.Jalview2XML
|
0.0402958434%
|
|
|
jalview.util.UrlLink
jalview.util.UrlLink
|
0.037878793.8%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.urls.IdentifiersUrlProvider
jalview.urls.IdentifiersUrlProvider
|
0.0366972463.7%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0357598963.6%
|
|
|
jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
|
0.0310559013.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
|
0.0256410262.6%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.0188679251.9%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0172651931.7%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
|
0.0155642021.6%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
|
|
|
jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
|
0.0128205131.3%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0126353791.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125082291.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
|
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0077519380.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.00574712640.6%
|
|
