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Coverage Report

Test testCalculateMarks

Test
testCalculateMarks 1PASS 2 Sep 17:59:04 0.048
 
testCalculateMarks
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.833333383.3%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.8128078681.3%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.7575%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.workers.SecondaryStructureConsensusThread   jalview.workers.SecondaryStructureConsensusThread 0.696969769.7%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.6562565.6%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.6428571364.3%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.582542758.3%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.511904851.2%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.4545454745.5%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.4285714342.9%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.4182692241.8%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.util.SparseCount   jalview.util.SparseCount 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.util.Comparison   jalview.util.Comparison 0.3700787437%
jalview.util.MessageManager   jalview.util.MessageManager 0.3571428735.7%
jalview.io.AlignFile   jalview.io.AlignFile 0.356164435.6%
jalview.io.FileLoader   jalview.io.FileLoader 0.3511705735.1%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.3242187532.4%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.3241525332.4%
jalview.io.FastaFile   jalview.io.FastaFile 0.315315331.5%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.279365127.9%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.273972627.4%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2727272827.3%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.2528735725.3%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.2525%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.2491228124.9%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.2461719724.6%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2377300623.8%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.2336633723.4%
jalview.ext.android.SparseShortArray   jalview.ext.android.SparseShortArray 0.225988722.6%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.2246376922.5%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.20312520.3%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.188235318.8%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
jalview.io.FileParse   jalview.io.FileParse 0.164345416.4%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.1583166315.8%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.1551155115.5%
jalview.util.Format   jalview.util.Format 0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.142458114.2%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.1408450814.1%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.util.StringUtils   jalview.util.StringUtils 0.1212%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.1132075511.3%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.1124567511.2%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1111111111.1%
jalview.ext.android.ContainerHelpers   jalview.ext.android.ContainerHelpers 0.1111111111.1%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.io.FileFormat   jalview.io.FileFormat 0.1085271310.9%
jalview.util.QuickSort   jalview.util.QuickSort 0.10679611610.7%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.1024811210.2%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.0993788849.9%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.096774199.7%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.096008639.6%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0943396249.4%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.077791727.8%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.074766357.5%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.gui.Desktop   jalview.gui.Desktop 0.065266746.5%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.064285726.4%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.util.Platform   jalview.util.Platform 0.0566037745.7%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.bin.Console   jalview.bin.Console 0.0492610824.9%
jalview.datamodel.SecondaryStructureCount   jalview.datamodel.SecondaryStructureCount 0.0468754.7%
jalview.gui.Console   jalview.gui.Console 0.045871564.6%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.0416666684.2%
jalview.bin.Cache   jalview.bin.Cache 0.0385674953.9%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.0373333323.7%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.027397262.7%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0241691842.4%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.017182131.7%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.0127388541.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.0121028741.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.0081227440.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.0077519380.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0043859650.4%