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jalview.io.DataSourceType
jalview.io.DataSourceType
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1.0100%
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jalview.xml.binding.jalview.SequenceType
jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.project.Jalview2XML.JvAnnotRow
jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.gui.ProgressPanel
jalview.gui.ProgressPanel
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0.975609897.6%
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jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.xml.binding.jalview.AnnotationElement
jalview.xml.binding.jalview.AnnotationElement
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0.916666791.7%
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jalview.xml.binding.jalview.SequenceSet
jalview.xml.binding.jalview.SequenceSet
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0.894736889.5%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.871921287.2%
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jalview.viewmodel.styles.ViewStyle
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0.8476562584.8%
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jalview.xml.binding.jalview.JalviewModel.Viewport
jalview.xml.binding.jalview.JalviewModel.Viewport
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0.844202984.4%
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jalview.datamodel.VisibleRowsCollection
jalview.datamodel.VisibleRowsCollection
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0.833333383.3%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.833333383.3%
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jalview.datamodel.VisibleColsCollection
jalview.datamodel.VisibleColsCollection
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0.880%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.xml.binding.jalview.Annotation
jalview.xml.binding.jalview.Annotation
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0.7545454575.5%
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jalview.ws.jws2.jabaws2.Jws2InstanceFactory
jalview.ws.jws2.jabaws2.Jws2InstanceFactory
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0.7575%
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jalview.viewmodel.OverviewDimensions
jalview.viewmodel.OverviewDimensions
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0.7384615573.8%
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jalview.renderer.OverviewResColourFinder
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0.729729773%
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jalview.datamodel.RangeElementsIterator
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0.7187571.9%
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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0.7142857371.4%
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.datamodel.VisibleRowsIterator
jalview.datamodel.VisibleRowsIterator
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0.770%
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jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
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jalview.workers.SecondaryStructureConsensusThread
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jalview.ws.SequenceFetcher
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0.678571467.9%
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jalview.renderer.OverviewRenderer
jalview.renderer.OverviewRenderer
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0.6746987767.5%
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jalview.workers.ConservationThread
jalview.workers.ConservationThread
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jalview.xml.binding.jalview.Sequence
jalview.xml.binding.jalview.Sequence
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0.6428571364.3%
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jalview.datamodel.Profile
jalview.datamodel.Profile
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0.6428571364.3%
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jalview.xml.binding.jalview.JalviewModel.JSeq
jalview.xml.binding.jalview.JalviewModel.JSeq
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0.62562.5%
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jalview.jbgui.GAlignFrame
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0.5863377558.6%
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jalview.ws.jws2.jabaws2.Jws2Instance
jalview.ws.jws2.jabaws2.Jws2Instance
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jalview.xml.binding.jalview.JalviewModel
jalview.xml.binding.jalview.JalviewModel
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.550%
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.xml.binding.jalview.VAMSAS
jalview.xml.binding.jalview.VAMSAS
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0.550%
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jalview.xml.binding.jalview.JalviewModel.Viewport.Overview
jalview.xml.binding.jalview.JalviewModel.Viewport.Overview
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.gui.OverviewCanvas
jalview.gui.OverviewCanvas
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0.4913793249.1%
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jalview.gui.SplashScreen.SplashImage
jalview.gui.SplashScreen.SplashImage
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0.4705882447.1%
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jalview.gui.OverviewPanel
jalview.gui.OverviewPanel
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0.4588235345.9%
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jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
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0.4523809645.2%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4414715844.1%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.4322033843.2%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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jalview.io.AlignFile
jalview.io.AlignFile
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0.36986337%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.3571428735.7%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.356164435.6%
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jalview.util.Comparison
jalview.util.Comparison
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0.350393735%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3389830633.9%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3305214633.1%
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jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
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0.31531.5%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3097762231%
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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0.3095238231%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.3003300430%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.io.FileParse
jalview.io.FileParse
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0.250696425.1%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.2394366323.9%
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jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
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0.2340425623.4%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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jalview.ws.jws2.JabaWsServerQuery
jalview.ws.jws2.JabaWsServerQuery
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0.2291666722.9%
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jalview.ws.jws2.JabaPreset
jalview.ws.jws2.JabaPreset
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0.2272727322.7%
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jalview.viewmodel.OverviewDimensionsHideHidden
jalview.viewmodel.OverviewDimensionsHideHidden
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0.211267621.1%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.2085661120.9%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.project.Jalview2XML
jalview.project.Jalview2XML
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0.1996398320%
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jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
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0.1944444519.4%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1664868716.6%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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0.1555555615.6%
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jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
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0.1515%
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1475409914.8%
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jalview.log.JLogger
jalview.log.JLogger
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0.1428571514.3%
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jalview.gui.Desktop.MyDesktopPane
jalview.gui.Desktop.MyDesktopPane
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0.1428571514.3%
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jalview.ws.jws2.JabaParamStore
jalview.ws.jws2.JabaParamStore
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0.14062514.1%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.1392722713.9%
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jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
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0.12408759412.4%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1230769212.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1210191112.1%
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jalview.io.FormatAdapter
jalview.io.FormatAdapter
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0.1212%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.1176470611.8%
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jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
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0.11538461611.5%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.115051911.5%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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0.11428571511.4%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.1132075511.3%
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jalview.gui.Desktop
jalview.gui.Desktop
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0.112372311.2%
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jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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0.1085271310.9%
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jalview.log.JLoggerLog4j
jalview.log.JLoggerLog4j
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0.10679611610.7%
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jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.0993788849.9%
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jalview.gui.SplashScreen
jalview.gui.SplashScreen
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0.0974025959.7%
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jalview.util.ColorUtils
jalview.util.ColorUtils
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0.096774199.7%
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jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
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0.09523819.5%
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jalview.ws.dbsources.Xfam
jalview.ws.dbsources.Xfam
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0.086956528.7%
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jalview.ext.ensembl.EnsemblSequenceFetcher
jalview.ext.ensembl.EnsemblSequenceFetcher
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0.0833333368.3%
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jalview.gui.Console
jalview.gui.Console
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0.082568818.3%
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jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
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0.082191788.2%
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jalview.gui.ProgressBar
jalview.gui.ProgressBar
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0.081300818.1%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.0809061458.1%
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jalview.bin.Console
jalview.bin.Console
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0.078817737.9%
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jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
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0.070175447%
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jalview.gui.IdPanel
jalview.gui.IdPanel
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0.067264576.7%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.0657894766.6%
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jalview.analysis.CrossRef
jalview.analysis.CrossRef
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0.063524596.4%
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jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
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0.0617283966.2%
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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0.061386146.1%
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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0.061224496.1%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.059649126%
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jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.bin.Cache
jalview.bin.Cache
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0.057851245.8%
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jalview.ws.seqfetcher.ASequenceFetcher
jalview.ws.seqfetcher.ASequenceFetcher
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0.0577777775.8%
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jalview.util.Platform
jalview.util.Platform
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0.0566037745.7%
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jalview.ws.seqfetcher.DbSourceProxyImpl
jalview.ws.seqfetcher.DbSourceProxyImpl
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0.0540540555.4%
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jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
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0.0528586845.3%
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jalview.ws.jws1.Discoverer
jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
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0.0496894425%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.0468754.7%
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jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
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0.04566214.6%
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045317224.5%
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jalview.gui.WsParamSetManager
jalview.gui.WsParamSetManager
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0.0429447854.3%
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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0.042553194.3%
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jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
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0.0373831763.7%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.0373333323.7%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.035156253.5%
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jalview.gui.SliderPanel
jalview.gui.SliderPanel
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0.031253.1%
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jalview.ws.jws1.JPredClient
jalview.ws.jws1.JPredClient
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0.0310559013.1%
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jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
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0.0306603783.1%
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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0.0290581162.9%
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jalview.xml.binding.jalview.ObjectFactory
jalview.xml.binding.jalview.ObjectFactory
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0.0256410262.6%
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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0.0238907862.4%
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jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
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0.0169491531.7%
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jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
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0.0156251.6%
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jalview.ws.dbsources.Uniprot
jalview.ws.dbsources.Uniprot
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0.0155642021.6%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.0144230771.4%
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jalview.datamodel.SearchResults
jalview.datamodel.SearchResults
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0.0128205131.3%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.0128205131.3%
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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0.0125412541.3%
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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0.0122699381.2%
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.0117647061.2%
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jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.0081227440.8%
|
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.0077519380.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0043859650.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00362318850.4%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.00312989040.3%
|
|
