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com.stevesoft.pat.patInf
com.stevesoft.pat.patInf
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jalview.io.DataSourceType
jalview.io.DataSourceType
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jalview.renderer.ScaleRenderer.ScaleMark
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1.0100%
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jalview.ws.WSClient
jalview.ws.WSClient
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1.0100%
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jalview.datamodel.SecondaryStructureCount.SymbolCounts
jalview.datamodel.SecondaryStructureCount.SymbolCounts
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1.0100%
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jalview.datamodel.ResidueCount.SymbolCounts
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1.0100%
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jalview.structure.StructureImportSettings.TFType
jalview.structure.StructureImportSettings.TFType
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1.0100%
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jalview.jbgui.GAlignmentPanel
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0.9494%
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jalview.util.UserAgent
jalview.util.UserAgent
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0.885714388.6%
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jalview.analysis.Conservation
jalview.analysis.Conservation
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0.871921287.2%
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jalview.util.imagemaker.BitmapImageSizing
jalview.util.imagemaker.BitmapImageSizing
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0.8709677587.1%
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jalview.util.QuickSort.IntComparator
jalview.util.QuickSort.IntComparator
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jalview.gui.StructureViewer.ViewerType
jalview.gui.StructureViewer.ViewerType
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0.8461538684.6%
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com.stevesoft.pat.Rthings
com.stevesoft.pat.Rthings
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0.8461538684.6%
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mc_view.Residue
mc_view.Residue
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0.8461538684.6%
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jalview.datamodel.Profiles
jalview.datamodel.Profiles
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0.833333383.3%
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jalview.structure.AtomSpecModel
jalview.structure.AtomSpecModel
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0.833333383.3%
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jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
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0.7727272577.3%
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jalview.structures.models.SequenceStructureBindingModel
jalview.structures.models.SequenceStructureBindingModel
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0.7575%
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jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
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0.7575%
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jalview.fts.core.FTSDataColumnPreferences
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jalview.workers.SecondaryStructureConsensusThread
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jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
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0.7142857371.4%
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jalview.jbgui.GStructureViewer
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jalview.workers.ConsensusThread
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jalview.ws.SequenceFetcher
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jalview.datamodel.Profile
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jalview.math.AlignmentDimension
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jalview.util.MapUtils
jalview.util.MapUtils
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jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
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jalview.jbgui.GAlignFrame
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jalview.bin.ArgsParser
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jalview.schemes.FeatureSettingsAdapter
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jalview.workers.ConservationThread
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jalview.util.CaseInsensitiveString
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jalview.renderer.ScaleRenderer
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jalview.ext.jmol.JmolParser
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mc_view.PDBChain
mc_view.PDBChain
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jalview.workers.AlignCalcManager
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jalview.gui.AssociatePdbFileWithSeq
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com.stevesoft.pat.StrPos
com.stevesoft.pat.StrPos
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jalview.bin.argparser.ArgParser
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jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
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0.550%
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jalview.urls.IdOrgSettings
jalview.urls.IdOrgSettings
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0.550%
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mc_view.Bond
mc_view.Bond
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0.550%
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jalview.datamodel.ContactMapHolder
jalview.datamodel.ContactMapHolder
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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0.550%
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jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
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0.550%
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jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
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0.550%
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jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
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0.550%
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jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
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0.550%
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jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
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0.4761904847.6%
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jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
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0.475206647.5%
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jalview.jbgui.GStructureChooser
jalview.jbgui.GStructureChooser
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0.4727722747.3%
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jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
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0.466101746.6%
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jalview.io.StructureFile
jalview.io.StructureFile
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0.465116346.5%
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jalview.io.AlignFile
jalview.io.AlignFile
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0.4589041245.9%
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jalview.bin.argparser.ArgValue
jalview.bin.argparser.ArgValue
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0.447761244.8%
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jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
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0.4436363644.4%
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jalview.bin.Commands
jalview.bin.Commands
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0.4361567543.6%
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jalview.bin.argparser.SubVals
jalview.bin.argparser.SubVals
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0.432989743.3%
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jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
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0.4285714342.9%
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jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
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0.427884642.8%
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jalview.gui.ImageExporter
jalview.gui.ImageExporter
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0.4242424442.4%
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jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
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0.4166666641.7%
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jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
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0.4153846241.5%
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jalview.ext.so.SequenceOntology
jalview.ext.so.SequenceOntology
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0.412541.2%
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jalview.io.FileLoader
jalview.io.FileLoader
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0.4113712341.1%
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jalview.util.Comparison
jalview.util.Comparison
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0.4094488340.9%
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org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
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0.4012738840.1%
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
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0.440%
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jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
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0.440%
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jalview.schemes.TurnColourScheme
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0.440%
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jalview.schemes.StrandColourScheme
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0.440%
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jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
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0.440%
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jalview.structure.StructureImportSettings
jalview.structure.StructureImportSettings
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0.440%
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jalview.log.JalviewAppender
jalview.log.JalviewAppender
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0.388888938.9%
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jalview.datamodel.PDBEntry
jalview.datamodel.PDBEntry
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0.3832599238.3%
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jalview.gui.AppJmolBinding
jalview.gui.AppJmolBinding
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0.3831775838.3%
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jalview.datamodel.FloatContactMatrix
jalview.datamodel.FloatContactMatrix
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0.3838%
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jalview.util.ImageMaker
jalview.util.ImageMaker
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0.3798449638%
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jalview.bin.argparser.ArgValues
jalview.bin.argparser.ArgValues
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0.3730158837.3%
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jalview.bin.Cache
jalview.bin.Cache
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0.3691460236.9%
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jalview.util.Format
jalview.util.Format
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0.3685300436.9%
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jalview.gui.AlignViewport
jalview.gui.AlignViewport
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0.365296836.5%
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jalview.ws.datamodel.alphafold.PAEContactMatrix
jalview.ws.datamodel.alphafold.PAEContactMatrix
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0.3628318636.3%
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jalview.bin.argparser.ArgValuesMap
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0.361858236.2%
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jalview.io.FastaFile
jalview.io.FastaFile
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0.3603603536%
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jalview.util.MessageManager
jalview.util.MessageManager
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0.3571428735.7%
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jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
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0.3568904735.7%
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jalview.ext.jmol.JalviewJmolBinding
jalview.ext.jmol.JalviewJmolBinding
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0.353305835.3%
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jalview.jbgui.GStructureChooser.AssociateSeqPanel
jalview.jbgui.GStructureChooser.AssociateSeqPanel
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0.352941235.3%
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jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
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0.3489208534.9%
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jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
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0.3320312533.2%
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jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
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0.3253333332.5%
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jalview.datamodel.features.SequenceFeatures
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0.3248407532.5%
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jalview.ws.rest.RestServiceDescription
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0.31531.5%
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org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
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0.3143564531.4%
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com.stevesoft.pat.oneChar
com.stevesoft.pat.oneChar
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0.3142857331.4%
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jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
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0.313725531.4%
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jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
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0.3111668831.1%
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jalview.gui.AppJmol
jalview.gui.AppJmol
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0.3082706630.8%
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jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
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0.3072033830.7%
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jalview.datamodel.Sequence
jalview.datamodel.Sequence
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0.3062283730.6%
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jalview.structures.models.AAStructureBindingModel
jalview.structures.models.AAStructureBindingModel
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0.2895662529%
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jalview.ws.dbsources.EmblCdsSource
jalview.ws.dbsources.EmblCdsSource
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0.285714328.6%
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jalview.datamodel.Annotation
jalview.datamodel.Annotation
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jalview.schemes.JalviewColourScheme
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0.285714328.6%
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jalview.datamodel.annotations.AnnotationRowBuilder
jalview.datamodel.annotations.AnnotationRowBuilder
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0.282051328.2%
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mc_view.Atom
mc_view.Atom
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0.282051328.2%
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jalview.gui.structurechooser.StructureChooserQuerySource
jalview.gui.structurechooser.StructureChooserQuerySource
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0.2828%
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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0.279365127.9%
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jalview.io.FileParse
jalview.io.FileParse
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0.2674094726.7%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.2661042826.6%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.2608695626.1%
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jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
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0.2567975825.7%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.2525%
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jalview.renderer.AnnotationRendererFactory
jalview.renderer.AnnotationRendererFactory
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0.2525%
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jalview.io.gff.SequenceOntologyFactory
jalview.io.gff.SequenceOntologyFactory
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0.2525%
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jalview.gui.StructureViewerBase
jalview.gui.StructureViewerBase
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0.2492581624.9%
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jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
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0.2435897424.4%
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jalview.util.ErrorLog
jalview.util.ErrorLog
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0.2352941223.5%
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jalview.bin.BuildDetails
jalview.bin.BuildDetails
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0.2352941223.5%
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jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
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0.2333333323.3%
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jalview.structure.StructureCommandsBase
jalview.structure.StructureCommandsBase
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0.2317073223.2%
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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0.2312925223.1%
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com.stevesoft.pat.Range
com.stevesoft.pat.Range
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0.2272727322.7%
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com.stevesoft.pat.Bracket
com.stevesoft.pat.Bracket
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0.22522.5%
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jalview.datamodel.features.FeatureAttributes
jalview.datamodel.features.FeatureAttributes
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0.224806222.5%
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jalview.util.HttpUtils
jalview.util.HttpUtils
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0.2222222222.2%
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jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
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0.2187521.9%
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jalview.util.MapList
jalview.util.MapList
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0.2149532721.5%
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jalview.io.PDBFeatureSettings
jalview.io.PDBFeatureSettings
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0.2142857221.4%
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jalview.datamodel.features.FeatureAttributes.AttributeData
jalview.datamodel.features.FeatureAttributes.AttributeData
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0.2127659621.3%
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jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
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0.2075471720.8%
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com.stevesoft.pat.Regex
com.stevesoft.pat.Regex
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0.2072727220.7%
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jalview.ws.rest.InputType
jalview.ws.rest.InputType
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0.2056074720.6%
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jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
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0.2050078220.5%
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jalview.util.FileUtils
jalview.util.FileUtils
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0.2043010720.4%
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jalview.datamodel.Alignment
jalview.datamodel.Alignment
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0.1964618319.6%
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jalview.ws.datamodel.alphafold.MappableContactMatrix
jalview.ws.datamodel.alphafold.MappableContactMatrix
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0.1924686119.2%
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jalview.gui.ScalePanel
jalview.gui.ScalePanel
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0.1914062519.1%
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jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
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0.1914062519.1%
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jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel
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0.1857142918.6%
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jalview.util.ImageMaker.TYPE
jalview.util.ImageMaker.TYPE
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0.1818181918.2%
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com.stevesoft.pat.Pattern
com.stevesoft.pat.Pattern
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0.1805555518.1%
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jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
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0.1803278618%
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jalview.gui.IdCanvas
jalview.gui.IdCanvas
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0.1789473717.9%
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jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
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0.176470617.6%
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com.stevesoft.pat.patInt
com.stevesoft.pat.patInt
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0.17517.5%
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jalview.util.Platform
jalview.util.Platform
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0.174528317.5%
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jalview.bin.Console
jalview.bin.Console
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0.172413817.2%
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.1674876816.7%
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jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer
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0.1666666716.7%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1650485416.5%
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jalview.log.JLogger
jalview.log.JLogger
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0.1648351716.5%
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jalview.ws.dbsources.EBIAlfaFold
jalview.ws.dbsources.EBIAlfaFold
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0.1604477616%
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jalview.ws.jws1.WS1Client
jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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0.1549295815.5%
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jalview.bin.Jalview
jalview.bin.Jalview
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0.149819515%
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jalview.fts.core.FTSRestClient
jalview.fts.core.FTSRestClient
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0.1467181414.7%
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jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
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0.1428571514.3%
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jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
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0.1419141914.2%
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jalview.gui.StructureViewer
jalview.gui.StructureViewer
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0.1386138613.9%
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1353846213.5%
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jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
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jalview.util.ShortcutKeyMaskExWrapper
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com.stevesoft.pat.parsePerl
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com.stevesoft.pat.Or
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jalview.ws.dbsources.Xfam
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jalview.ws.dbsources.Pdb
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jalview.schemes.FeatureColour
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com.stevesoft.pat.OrMark
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com.stevesoft.pat.FastMulti
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jalview.gui.Desktop
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jalview.gui.IdPanel
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com.stevesoft.pat.RegOpt
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jalview.gui.AnnotationPanel
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jalview.analysis.CrossRef
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jalview.datamodel.DBRefEntry
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ext.vamsas.ServiceHandle
ext.vamsas.ServiceHandle
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jalview.gui.ViewSelectionMenu
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jalview.ws.seqfetcher.ASequenceFetcher
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jalview.datamodel.ColumnSelection.IntList
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jalview.datamodel.HiddenColumns
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jalview.ws.jws1.Discoverer
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jalview.analysis.GeneticCodes
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jalview.gui.Desktop.MyDesktopPane
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jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource
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org.json.simple.JSONObject
org.json.simple.JSONObject
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jalview.ws.jws1.JPredClient
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jalview.datamodel.HiddenSequences
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jalview.schemes.ClustalxColourScheme
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jalview.util.MappingUtils
jalview.util.MappingUtils
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jalview.gui.Console
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jalview.ws.jws2.Jws2Discoverer
jalview.ws.jws2.Jws2Discoverer
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
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mc_view.PDBfile
mc_view.PDBfile
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jalview.controller.AlignViewController
jalview.controller.AlignViewController
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jalview.gui.SeqPanel
jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
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jalview.datamodel.ColumnSelection
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jalview.gui.SequenceFetcher
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org.json.simple.JSONArray
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jalview.gui.QuitHandler
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com.stevesoft.pat.RegRes
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jalview.analysis.AlignmentUtils
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