|
jalview.ws.WSClient
jalview.ws.WSClient
|
1.0100%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.analysis.AlignmentGenerator
jalview.analysis.AlignmentGenerator
|
0.5615384656.2%
|
|
|
jalview.datamodel.RangeIterator
jalview.datamodel.RangeIterator
|
0.4594594545.9%
|
|
|
jalview.datamodel.AlignedCodon
jalview.datamodel.AlignedCodon
|
0.4545454745.5%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
0.4285714342.9%
|
|
|
jalview.ws.rest.RestServiceDescription
jalview.ws.rest.RestServiceDescription
|
0.31531.5%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3070866230.7%
|
|
|
jalview.analysis.Dna
jalview.analysis.Dna
|
0.2681564426.8%
|
|
|
jalview.ws.rest.params.Alignment
jalview.ws.rest.params.Alignment
|
0.2435897424.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.2380952423.8%
|
|
|
jalview.datamodel.VisibleContigsIterator
jalview.datamodel.VisibleContigsIterator
|
0.2340425623.4%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.io.FastaFile
jalview.io.FastaFile
|
0.2252252322.5%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2223183422.2%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.2146118721.5%
|
|
|
jalview.ws.rest.InputType
jalview.ws.rest.InputType
|
0.2056074720.6%
|
|
|
jalview.util.ShiftList
jalview.util.ShiftList
|
0.1694915316.9%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1480446914.8%
|
|
|
jalview.analysis.CodonComparator
jalview.analysis.CodonComparator
|
0.1290322512.9%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.1289062512.9%
|
|
|
jalview.ws.rest.params.SeqGroupIndexVector
jalview.ws.rest.params.SeqGroupIndexVector
|
0.12408759412.4%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.1210191112.1%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1111111111.1%
|
|
|
jalview.ws.rest.params.AnnotationFile
jalview.ws.rest.params.AnnotationFile
|
0.10256410410.3%
|
|
|
jalview.util.StringUtils
jalview.util.StringUtils
|
0.098461549.8%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.081632658.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.080188688%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.088%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.074534167.5%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.0736196347.4%
|
|
|
jalview.ws.rest.RestClient
jalview.ws.rest.RestClient
|
0.0705128247.1%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.0616438356.2%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.0602258486%
|
|
|
jalview.datamodel.AlignedCodonFrame
jalview.datamodel.AlignedCodonFrame
|
0.0511945375.1%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.055%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0492610824.9%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0371900833.7%
|
|
|
jalview.util.MapList
jalview.util.MapList
|
0.0358255473.6%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.0357142873.6%
|
|
|
jalview.datamodel.Mapping
jalview.datamodel.Mapping
|
0.0346320353.5%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.0310077523.1%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.027397262.7%
|
|
|
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping
|
0.0267857152.7%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.019801982%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0173333321.7%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.0156251.6%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.0094339620.9%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.0057533260.6%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.00278551530.3%
|
|
