Build #624

Build and run tests under Java 11

Build result summary

Details

Completed
Duration
8 minutes
Flags
Custom revision
Labels
None
Agent
Default Agent
Revision
feature/JAL-4386_calculate_tree_using_secondary_structure_annotation feature/JAL-4386_calculate_tree_using_secondary_structure_annotation
Total tests
1703

Custom variables

Custom revision
feature/JAL-4386_calculate_tree_using_secondary_structure_annotation feature/JAL-4386_calculate_tree_using_secondary_structure_annotation

Code commits

Author Commit Message Commit date
Renia Correya <reniacorreya@users.noreply.github.com> Renia Correya <reniacorreya@users.noreply.github.com> e10ae7d68d38a30a4aed7eaef6a34f01b654eda9 e10ae7d68d38a30a4aed7eaef6a34f01b654eda9 JAL-4386 Calculate tree using secondary structure annotation - Documentation, Changes to include Secondary structure from JPred.

Tests

New test failures 6
Status Test View job Duration
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_notSimilar History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_1nsup7v47qh(SecondaryStructureDistanceModelTest.java:186)
(43 more lines...)
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_AllSimilar History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_1m4lksd47pt(SecondaryStructureDistanceModelTest.java:136)
(43 more lines...)
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_PartiallySimilar History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_1g9sb0047q5(SecondaryStructureDistanceModelTest.java:161)
(43 more lines...)
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_withCoil History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_11mrvdk47qt(SecondaryStructureDistanceModelTest.java:212)
(43 more lines...)
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_withSSUndefinedInEitherOneSeq History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_1i0mce047rl(SecondaryStructureDistanceModelTest.java:287)
(43 more lines...)
Collapse Failed SecondaryStructureDistanceModelTest testFindDistances_withGap History
Clover and Tests < 1 sec 
Classname: java.lang.NullPointerException
Message: null
Stacktrace:
java.lang.NullPointerException
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.isSSUndefinedOrNotAdded(SecondaryStructureDistanceModel.java:316)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findSeqsWithUndefinedSS(SecondaryStructureDistanceModel.java:303)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModel.findDistances(SecondaryStructureDistanceModel.java:157)
	at jalview.analysis.scoremodels.SecondaryStructureDistanceModelTest.__CLR4_4_13smw5x47r5(SecondaryStructureDistanceModelTest.java:244)
(43 more lines...)

JIRA issues

IssueDescriptionStatus
Unknown Issue TypeJAL-4386Could not obtain issue details from JIRA