Coverage Report
File TrimRegionCommand.java
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Classes
| Class | Line # | Actions | |||
|---|---|---|---|---|---|
| TrimRegionCommand | 26 | 13 | 5 |
Contributing tests
This file is covered by 6 tests.
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| 1 | /* | |
| 2 | * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) | |
| 3 | * Copyright (C) $$Year-Rel$$ The Jalview Authors | |
| 4 | * | |
| 5 | * This file is part of Jalview. | |
| 6 | * | |
| 7 | * Jalview is free software: you can redistribute it and/or | |
| 8 | * modify it under the terms of the GNU General Public License | |
| 9 | * as published by the Free Software Foundation, either version 3 | |
| 10 | * of the License, or (at your option) any later version. | |
| 11 | * | |
| 12 | * Jalview is distributed in the hope that it will be useful, but | |
| 13 | * WITHOUT ANY WARRANTY; without even the implied warranty | |
| 14 | * of MERCHANTABILITY or FITNESS FOR A PARTICULAR | |
| 15 | * PURPOSE. See the GNU General Public License for more details. | |
| 16 | * | |
| 17 | * You should have received a copy of the GNU General Public License | |
| 18 | * along with Jalview. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | * The Jalview Authors are detailed in the 'AUTHORS' file. | |
| 20 | */ | |
| 21 | package jalview.commands; | |
| 22 | ||
| 23 | import jalview.datamodel.AlignmentI; | |
| 24 | import jalview.datamodel.SequenceI; | |
| 25 | ||
| 26 | public class TrimRegionCommand extends EditCommand | |
| 27 | { | |
| 28 | int columnsDeleted; | |
| 29 | ||
| 30 | /** | |
| 31 | * Constructs and performs a trim alignment command | |
| 32 | * | |
| 33 | * @param description | |
| 34 | * (to show in Undo/Redo menu) | |
| 35 | * @param trimLeft | |
| 36 | * if true trim to left of column, else to right | |
| 37 | * @param seqs | |
| 38 | * the sequences to trim | |
| 39 | * @param column | |
| 40 | * the alignment column (base 0) from which to trim | |
| 41 | * @param al | |
| 42 | */ | |
| 43 | 6 |  public TrimRegionCommand(String description, boolean trimLeft, |
| 44 | SequenceI[] seqs, int column, AlignmentI al) | |
| 45 | { | |
| 46 | 6 | this.description = description; |
| 47 | 6 | if (trimLeft) |
| 48 | { | |
| 49 | 3 | if (column == 0) |
| 50 | { | |
| 51 | 1 | return; |
| 52 | } | |
| 53 | ||
| 54 | 2 | columnsDeleted = column; |
| 55 | ||
| 56 | 2 | setEdit(new Edit(Action.CUT, seqs, 0, column, al)); |
| 57 | } | |
| 58 | else | |
| 59 | { | |
| 60 | 3 | int width = al.getWidth() - column - 1; |
| 61 | 3 | if (width < 1) |
| 62 | { | |
| 63 | 1 | return; |
| 64 | } | |
| 65 | ||
| 66 | 2 | columnsDeleted = width; |
| 67 | ||
| 68 | 2 | setEdit(new Edit(Action.CUT, seqs, column + 1, width, al)); |
| 69 | } | |
| 70 | ||
| 71 | 4 | performEdit(0, null); |
| 72 | } | |
| 73 | ||
| 74 | 6 | @Override |
| 75 | public int getSize() | |
| 76 | { | |
| 77 | 6 | return columnsDeleted; |
| 78 | } | |
| 79 | ||
| 80 | } |