Classes

Class	Line #	Total Statements	Complexity	TOTAL Coverage	Actions
Tree	40	8	6	0.00%	Show methods

Class Tree

Class Tree	Line # 40	Total Statements 8	Complexity 6	TOTAL Coverage 0.00%
Tree()   Tree()	4242	1.01	1.01	0.0 0.00%
formatForInput(RestJob) : ContentBody   formatForInput(RestJob) : ContentBody	4848	1.01	1.01	0.0 0.00%
getURLtokenPrefix() : String   getURLtokenPrefix() : String	6161	1.01	1.01	0.0 0.00%
getURLEncodedParameter() : List<String>   getURLEncodedParameter() : List<String>	6666	3.03	1.01	0.0 0.00%
configureProperty(String,String,StringBuffer) : boolean   configureProperty(String,String,StringBuffer) : boolean	7474	1.01	1.01	0.0 0.00%
getOptions() : List<OptionI>   getOptions() : List<OptionI>	8181	1.01	1.01	0.0 0.00%

 

Contributing tests

Source view

1		/*
2		* Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3		* Copyright (C) $$Year-Rel$$ The Jalview Authors
4		*
5		* This file is part of Jalview.
6		*
7		* Jalview is free software: you can redistribute it and/or
8		* modify it under the terms of the GNU General Public License
9		* as published by the Free Software Foundation, either version 3
10		* of the License, or (at your option) any later version.
11		*
12		* Jalview is distributed in the hope that it will be useful, but
13		* WITHOUT ANY WARRANTY; without even the implied warranty
14		* of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15		* PURPOSE. See the GNU General Public License for more details.
16		*
17		* You should have received a copy of the GNU General Public License
18		* along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19		* The Jalview Authors are detailed in the 'AUTHORS' file.
20		*/
21		package jalview.ws.rest.params;
22
23		import jalview.util.MessageManager;
24		import jalview.ws.params.OptionI;
25		import jalview.ws.rest.InputType;
26		import jalview.ws.rest.RestJob;
27
28		import java.io.UnsupportedEncodingException;
29		import java.util.ArrayList;
30		import java.util.List;
31
32		import org.apache.http.entity.mime.content.ContentBody;
33
34		/**
35		* format a tree for input to a rest service
36		*
37		* @author JimP
38		*
39		*/
		0% Uncovered Elements: 14 (14) Complexity: 6 Complexity Density: 0.75
40		public class Tree extends InputType
41		{
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
42	0	public Tree()...
43		{
44	0	super(new Class[] { jalview.analysis.NJTree.class });
45		}
46
47		// TODO specify modifiers for tree output format
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
48	0	@Override...
49		public ContentBody formatForInput(RestJob rj)
50		throws UnsupportedEncodingException
51		{
52		// TODO: implement tree inputType
53		/*
54		* rj.getTreeForInput(token); return new StringBody(new )
55		*/
56	0	throw new Error(MessageManager
57		.getString("error.tree_inputtype_not_yet_implemented"));
58		// return null;
59		}
60
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
61	0	public String getURLtokenPrefix()...
62		{
63	0	return "NEWICK";
64		}
65
		0% Uncovered Elements: 3 (3) Complexity: 1 Complexity Density: 0.33
66	0	@Override...
67		public List<String> getURLEncodedParameter()
68		{
69	0	ArrayList<String> prms = new ArrayList<String>();
70	0	super.addBaseParams(prms);
71	0	return prms;
72		}
73
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
74	0	@Override...
75		public boolean configureProperty(String tok, String val,
76		StringBuffer warnings)
77		{
78	0	return true;
79		}
80
		0% Uncovered Elements: 1 (1) Complexity: 1 Complexity Density: 1
81	0	@Override...
82		public List<OptionI> getOptions()
83		{
84	0	return getBaseOptions();
85		}
86
87		}