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jalview.xml.binding.jalview.SequenceType
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1.0100%
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jalview.xml.binding.jalview.JalviewModel.Viewport.Overview
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1.0100%
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1.0100%
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jalview.ws.WSClient
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jalview.project.Jalview2XML.JvAnnotRow
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1.0100%
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1.0100%
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jalview.jbgui.GAlignmentPanel
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jalview.xml.binding.jalview.SequenceSet
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jalview.renderer.OverviewResColourFinder
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jalview.analysis.Conservation
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jalview.xml.binding.jalview.JalviewModel.Viewport
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jalview.viewmodel.styles.ViewStyle
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jalview.io.TCoffeeScoreFile.Header
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jalview.datamodel.VisibleColsCollection
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0.880%
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jalview.xml.binding.jalview.JalviewModel.JSeq
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jalview.util.LinkedIdentityHashSet.IdentityWrapper
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jalview.datamodel.VisibleRowsIterator
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jalview.io.TCoffeeScoreFile
jalview.io.TCoffeeScoreFile
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jalview.analysis.SequenceIdMatcher.SeqIdName
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jalview.gui.ColourMenuHelper
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0.550%
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jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
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0.550%
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jalview.xml.binding.jalview.VAMSAS
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0.550%
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jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
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jalview.schemes.ZappoColourScheme
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0.550%
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jalview.schemes.NucleotideColourScheme
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0.550%
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jalview.schemes.OceanColourScheme
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0.550%
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jalview.util.MessageManager
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jalview.io.FileLoader
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jalview.analysis.SequenceIdMatcher
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jalview.io.AlignFile
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jalview.io.TCoffeeScoreFile.Block
jalview.io.TCoffeeScoreFile.Block
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jalview.datamodel.HiddenCursorPosition
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jalview.util.ShortcutKeyMaskExWrapper11
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jalview.datamodel.Profile
jalview.datamodel.Profile
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jalview.io.FileFormats
jalview.io.FileFormats
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0.440%
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jalview.ws.dbsources.EmblSource
jalview.ws.dbsources.EmblSource
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0.440%
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jalview.schemes.HydrophobicColourScheme
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0.440%
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0.440%
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jalview.schemes.BuriedColourScheme
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0.440%
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jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
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0.3702579737%
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jalview.gui.AlignViewport
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jalview.io.FastaFile
jalview.io.FastaFile
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jalview.util.Comparison
jalview.util.Comparison
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jalview.io.IdentifyFile
jalview.io.IdentifyFile
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jalview.project.Jalview2XML
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jalview.io.BackupFiles
jalview.io.BackupFiles
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jalview.ws.jws2.SequenceAnnotationWSClient
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jalview.ws.dbsources.EmblCdsSource
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jalview.schemes.JalviewColourScheme
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jalview.io.FileParse
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jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
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jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
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jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
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0.2525%
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jalview.renderer.AnnotationRendererFactory
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jalview.schemes.ColourSchemes
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jalview.ws.uimodel.AlignAnalysisUIText
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jalview.datamodel.VisibleContigsIterator
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jalview.ws.jws2.Jws2Discoverer
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0.2333333323.3%
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jalview.ws.jws2.Jws2Client
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0.2228915722.3%
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jalview.gui.ScalePanel
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jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
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0.211267621.1%
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jalview.analysis.AAFrequency
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jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
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0.1910241719.1%
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jalview.util.QuickSort
jalview.util.QuickSort
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0.1877022718.8%
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jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
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0.1739130517.4%
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jalview.gui.SeqCanvas
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jalview.util.ColorUtils
jalview.util.ColorUtils
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jalview.gui.AlignFrame
jalview.gui.AlignFrame
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0.1626657116.3%
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jalview.ws.jws1.WS1Client
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0.1616%
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jalview.gui.Desktop.MyDesktopManager
jalview.gui.Desktop.MyDesktopManager
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jalview.util.Format
jalview.util.Format
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0.1490683314.9%
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0.1428571514.3%
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0.1330049213.3%
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jalview.ws.rest.params.SeqGroupIndexVector
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jalview.util.StringUtils
jalview.util.StringUtils
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0.1230769212.3%
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jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
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0.1210191112.1%
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jalview.io.FormatAdapter
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0.1212%
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jalview.gui.AnnotationPanel
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jalview.schemes.Blosum62ColourScheme
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jalview.analysis.scoremodels.ScoreModels
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0.11538461611.5%
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jalview.ws.rest.RestClient
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jalview.datamodel.Annotation
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jalview.util.ShortcutKeyMaskExWrapper
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0.1111111111.1%
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jalview.io.FileFormat
jalview.io.FileFormat
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jalview.ws.rest.params.AnnotationFile
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0.10256410410.3%
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jalview.gui.Desktop
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jalview.io.AppletFormatAdapter
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jalview.ws.dbsources.Xfam
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jalview.ext.ensembl.EnsemblSequenceFetcher
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jalview.gui.Console
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jalview.schemes.RNAHelicesColour
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jalview.gui.IdPanel
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jalview.schemes.PIDColourScheme
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0.066666676.7%
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jalview.analysis.CrossRef
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jalview.structure.StructureSelectionManager
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jalview.analysis.scoremodels.ScoreMatrix
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ext.vamsas.ServiceHandle
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jalview.bin.Cache
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0.0606060626.1%
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jalview.gui.ViewSelectionMenu
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0.059405945.9%
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jalview.ws.seqfetcher.ASequenceFetcher
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jalview.io.AnnotationFile
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jalview.util.Platform
jalview.util.Platform
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jalview.datamodel.ColumnSelection.IntList
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jalview.ws.seqfetcher.DbSourceProxyImpl
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jalview.ws.jws1.Discoverer
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0.0512820525.1%
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jalview.datamodel.HiddenSequences
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jalview.util.DBRefUtils
jalview.util.DBRefUtils
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0.045317224.5%
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jalview.xml.binding.jalview.ObjectFactory
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jalview.ws.dbsources.Pdb
jalview.ws.dbsources.Pdb
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jalview.ws.jws2.JabaParamStore
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jalview.datamodel.SequenceGroup
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jalview.schemes.ClustalxColourScheme
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jalview.datamodel.HiddenColumnsCursor
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jalview.ws.dbsources.Uniprot
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jalview.controller.AlignViewController
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0.0136518771.4%
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jalview.datamodel.SearchResults
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jalview.analysis.AlignSeq
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jalview.gui.SeqPanel
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jalview.io.SequenceAnnotationReport
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jalview.bin.Jalview
jalview.bin.Jalview
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0.0117328521.2%
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jalview.util.HttpUtils
jalview.util.HttpUtils
|
0.01169590651.2%
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.0103092781%
|
|
jalview.gui.SequenceFetcher
jalview.gui.SequenceFetcher
|
0.0089285720.9%
|
|
jalview.bin.argparser.BootstrapArgs
jalview.bin.argparser.BootstrapArgs
|
0.0082644620.8%
|
|
jalview.ext.ensembl.EnsemblGene
jalview.ext.ensembl.EnsemblGene
|
0.0081632650.8%
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0080409360.8%
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
jalview.gui.QuitHandler
jalview.gui.QuitHandler
|
0.00722021660.7%
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.00312989040.3%
|
|