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Test testStoreAndRecoverGeneLocus

Test
testStoreAndRecoverGeneLocus 1PASS 13 Nov 18:30:33 0.172
 
testStoreAndRecoverGeneLocus
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.xml.binding.jalview.SequenceType   jalview.xml.binding.jalview.SequenceType 1.0100%
jalview.xml.binding.jalview.MapListType   jalview.xml.binding.jalview.MapListType 1.0100%
jalview.xml.binding.jalview.MapListType.MapListFrom   jalview.xml.binding.jalview.MapListType.MapListFrom 1.0100%
jalview.xml.binding.jalview.MapListType.MapListTo   jalview.xml.binding.jalview.MapListType.MapListTo 1.0100%
jalview.renderer.ScaleRenderer.ScaleMark   jalview.renderer.ScaleRenderer.ScaleMark 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.project.Jalview2XML.JvAnnotRow   jalview.project.Jalview2XML.JvAnnotRow 1.0100%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.xml.binding.jalview.Sequence.DBRef   jalview.xml.binding.jalview.Sequence.DBRef 0.937593.8%
jalview.xml.binding.jalview.AnnotationElement   jalview.xml.binding.jalview.AnnotationElement 0.916666791.7%
jalview.xml.binding.jalview.SequenceSet   jalview.xml.binding.jalview.SequenceSet 0.894736889.5%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.874384287.4%
jalview.util.QuickSort.IntComparator   jalview.util.QuickSort.IntComparator 0.8571428785.7%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.8476562584.8%
jalview.xml.binding.jalview.JalviewModel.Viewport   jalview.xml.binding.jalview.JalviewModel.Viewport 0.844202984.4%
jalview.datamodel.VisibleContigsIterator   jalview.datamodel.VisibleContigsIterator 0.8085106680.9%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.xml.binding.jalview.JalviewModel   jalview.xml.binding.jalview.JalviewModel 0.769230876.9%
jalview.xml.binding.jalview.Annotation   jalview.xml.binding.jalview.Annotation 0.7545454575.5%
jalview.xml.binding.jalview.JalviewModel.JSeq   jalview.xml.binding.jalview.JalviewModel.JSeq 0.7575%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.7575%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.xml.binding.jalview.Sequence   jalview.xml.binding.jalview.Sequence 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.datamodel.StartRegionIterator   jalview.datamodel.StartRegionIterator 0.694444469.4%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.687568.8%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.666666766.7%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.607017560.7%
jalview.util.ParseHtmlBodyAndLinks   jalview.util.ParseHtmlBodyAndLinks 0.594202959.4%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.renderer.ScaleRenderer   jalview.renderer.ScaleRenderer 0.5656%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.559523856%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.550%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
jalview.xml.binding.jalview.VAMSAS   jalview.xml.binding.jalview.VAMSAS 0.550%
jalview.xml.binding.jalview.Mapping   jalview.xml.binding.jalview.Mapping 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.4855769348.6%
jalview.util.MessageManager   jalview.util.MessageManager 0.4761904847.6%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.4592391345.9%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.4523809645.2%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.4464285744.6%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.4322033843.2%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.3947895839.5%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.388888938.9%
jalview.datamodel.Range   jalview.datamodel.Range 0.388888938.9%
jalview.io.FileLoader   jalview.io.FileLoader 0.3879598738.8%
jalview.datamodel.GeneLocus   jalview.datamodel.GeneLocus 0.37537.5%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.3664643536.6%
jalview.io.FastaFile   jalview.io.FastaFile 0.3603603536%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.3564356635.6%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3563636235.6%
jalview.io.AlignFile   jalview.io.AlignFile 0.356164435.6%
jalview.util.QuickSort   jalview.util.QuickSort 0.346278334.6%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.3447488534.5%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.3428571534.3%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.3356164433.6%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3144876431.4%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.3142857331.4%
jalview.project.Jalview2XML   jalview.project.Jalview2XML 0.312211431.2%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.3056603730.6%
jalview.util.Comparison   jalview.util.Comparison 0.299212629.9%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.280590728.1%
jalview.io.FileParse   jalview.io.FileParse 0.2785515227.9%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2727272827.3%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.258503425.9%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.2547770725.5%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.253521125.4%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.2528735725.3%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.2525%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.2525%
jalview.renderer.AnnotationRendererFactory   jalview.renderer.AnnotationRendererFactory 0.2525%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.2336633723.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.2292387522.9%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.2163406221.6%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.2067039220.7%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1944444519.4%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.1739130517.4%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1674876816.7%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.1555555615.6%
jalview.util.Format   jalview.util.Format 0.1490683314.9%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1475409914.8%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.1462514.6%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.1434426214.3%
jalview.log.JLogger   jalview.log.JLogger 0.1428571514.3%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.1428571514.3%
jalview.bin.Console   jalview.bin.Console 0.1330049213.3%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1311357913.1%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.1208459212.1%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.util.StringUtils   jalview.util.StringUtils 0.1212%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.1212%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.1176470611.8%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.11688311411.7%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.11538461611.5%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.11428571511.4%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.1123949611.2%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.gui.Desktop   jalview.gui.Desktop 0.1087699310.9%
jalview.io.FileFormat   jalview.io.FileFormat 0.1085271310.9%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.10679611610.7%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.0993788849.9%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.0860215058.6%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.084905668.5%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.082191788.2%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.081300818.1%
jalview.datamodel.SequenceGroup   jalview.datamodel.SequenceGroup 0.07413017.4%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.066666676.7%
jalview.viewmodel.seqfeatures.FeatureRendererModel   jalview.viewmodel.seqfeatures.FeatureRendererModel 0.0657276966.6%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.065420566.5%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.063926946.4%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.063328426.3%
jalview.viewmodel.seqfeatures.FeaturesDisplayed   jalview.viewmodel.seqfeatures.FeaturesDisplayed 0.06256.2%
jalview.util.MapList   jalview.util.MapList 0.0623052986.2%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.0617283966.2%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.061224496.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.util.Platform   jalview.util.Platform 0.0566037745.7%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0560747655.6%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.0512820525.1%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.045317224.5%
jalview.xml.binding.jalview.ObjectFactory   jalview.xml.binding.jalview.ObjectFactory 0.0427350444.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.0416666684.2%
jalview.bin.Cache   jalview.bin.Cache 0.0385674953.9%
jalview.gui.TreePanel   jalview.gui.TreePanel 0.0319488833.2%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.schemes.FeatureColour   jalview.schemes.FeatureColour 0.0294736852.9%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.028776982.9%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.026315792.6%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.0256111752.6%
jalview.structure.StructureCommandsBase   jalview.structure.StructureCommandsBase 0.0243902432.4%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0169491531.7%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.gui.AppJmol   jalview.gui.AppJmol 0.0150375941.5%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.bin.Jalview   jalview.bin.Jalview 0.0117328521.2%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.01169590651.2%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.0103092781%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.0082644620.8%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%