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Coverage Report

Test pfamFileDataExtraction

Test
pfamFileDataExtraction 1PASS 13 Nov 18:29:20 0.116
 
pfamFileDataExtraction
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
com.stevesoft.pat.FastChar   com.stevesoft.pat.FastChar 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.8585%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.880%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.779069877.9%
com.stevesoft.pat.Skip2   com.stevesoft.pat.Skip2 0.777777877.8%
com.stevesoft.pat.FastBracket   com.stevesoft.pat.FastBracket 0.7544910375.4%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.7575%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.685714368.6%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.681818268.2%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.662566.3%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.62562.5%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.601851960.2%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.589743659%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.583333358.3%
com.stevesoft.pat.Start   com.stevesoft.pat.Start 0.5454545654.5%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.5251798652.5%
com.stevesoft.pat.NullPattern   com.stevesoft.pat.NullPattern 0.550%
jalview.io.AlignFile   jalview.io.AlignFile 0.4931506849.3%
com.stevesoft.pat.Branch   com.stevesoft.pat.Branch 0.4630872646.3%
com.stevesoft.pat.Skip   com.stevesoft.pat.Skip 0.4594594545.9%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.4429530244.3%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.io.StockholmFile   jalview.io.StockholmFile 0.4037433340.4%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.392727339.3%
com.stevesoft.pat.DotMulti   com.stevesoft.pat.DotMulti 0.3623188436.2%
jalview.util.Comparison   jalview.util.Comparison 0.3385826633.9%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.ws.jws2.SequenceAnnotationWSClient   jalview.ws.jws2.SequenceAnnotationWSClient 0.2903225729%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.2727272827.3%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.2528735725.3%
com.stevesoft.pat.StringRule   com.stevesoft.pat.StringRule 0.2525%
jalview.io.FileParse   jalview.io.FileParse 0.2451253524.5%
jalview.ws.uimodel.AlignAnalysisUIText   jalview.ws.uimodel.AlignAnalysisUIText 0.2439024424.4%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.util.MessageManager   jalview.util.MessageManager 0.2380952423.8%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.2336633723.4%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.2228915722.3%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.2222222222.2%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.2222222222.2%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.217391321.7%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.2108843521.1%
com.stevesoft.pat.End   com.stevesoft.pat.End 0.2068965620.7%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.1859861618.6%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.172517.2%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.1643835616.4%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.1598639516%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.util.QuickSort   jalview.util.QuickSort 0.10679611610.7%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.1057401810.6%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.util.StringUtils   jalview.util.StringUtils 0.098461549.8%
jalview.gui.SplashScreen   jalview.gui.SplashScreen 0.0974025959.7%
com.stevesoft.pat.ReplaceRule   com.stevesoft.pat.ReplaceRule 0.08771938.8%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.086956528.7%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.io.FileFormats   jalview.io.FileFormats 0.088%
jalview.bin.Console   jalview.bin.Console 0.078817737.9%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.0714285757.1%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.0660792966.6%
jalview.log.JLogger   jalview.log.JLogger 0.065934076.6%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.065217396.5%
jalview.io.FileFormat   jalview.io.FileFormat 0.0620155046.2%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.059523816%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.0456238354.6%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.0416666684.2%
jalview.bin.Cache   jalview.bin.Cache 0.0413223134.1%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.0308133293.1%
jalview.util.Platform   jalview.util.Platform 0.0188679251.9%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.0127388541.3%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.009132420.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.0089285720.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.0080971660.8%
jalview.gui.Desktop   jalview.gui.Desktop 0.00626423680.6%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.00455235220.5%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.00235849060.2%