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Test openStructureFileForSequenceTest

Test
openStructureFileForSequenceTest 1PASS 13 Nov 18:29:26 0.979
 
openStructureFileForSequenceTest
com.stevesoft.pat.patInf   com.stevesoft.pat.patInf 1.0100%
jalview.io.DataSourceType   jalview.io.DataSourceType 1.0100%
jalview.ws.WSClient   jalview.ws.WSClient 1.0100%
jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder   jalview.datamodel.annotations.AlphaFoldAnnotationRowBuilder 1.0100%
jalview.urls.IdOrgSettings   jalview.urls.IdOrgSettings 1.0100%
jalview.datamodel.ResidueCount.SymbolCounts   jalview.datamodel.ResidueCount.SymbolCounts 1.0100%
jalview.structure.StructureImportSettings.TFType   jalview.structure.StructureImportSettings.TFType 1.0100%
jalview.jbgui.GAlignmentPanel   jalview.jbgui.GAlignmentPanel 0.9494%
jalview.io.JalviewFileChooser.RecentlyOpened   jalview.io.JalviewFileChooser.RecentlyOpened 0.990%
jalview.util.UserAgent   jalview.util.UserAgent 0.885714388.6%
jalview.gui.SplashScreen.SplashImage   jalview.gui.SplashScreen.SplashImage 0.8823529588.2%
jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer   jalview.io.JalviewFileChooser.recentlyOpenedCellRenderer 0.869565287%
jalview.analysis.Conservation   jalview.analysis.Conservation 0.866995186.7%
jalview.json.binding.biojs.BioJSReleasePojo   jalview.json.binding.biojs.BioJSReleasePojo 0.8461538684.6%
com.stevesoft.pat.Rthings   com.stevesoft.pat.Rthings 0.8461538684.6%
mc_view.Residue   mc_view.Residue 0.8461538684.6%
jalview.util.UrlConstants   jalview.util.UrlConstants 0.880%
jalview.gui.ItemsRenderer   jalview.gui.ItemsRenderer 0.777777877.8%
jalview.util.LinkedIdentityHashSet   jalview.util.LinkedIdentityHashSet 0.7727272577.3%
jalview.gui.JalviewChangeSupport   jalview.gui.JalviewChangeSupport 0.7575%
jalview.structures.models.SequenceStructureBindingModel   jalview.structures.models.SequenceStructureBindingModel 0.7575%
jalview.fts.core.FTSDataColumnPreferences   jalview.fts.core.FTSDataColumnPreferences 0.745762774.6%
jalview.datamodel.Profiles   jalview.datamodel.Profiles 0.7333333573.3%
jalview.gui.FeatureRenderer   jalview.gui.FeatureRenderer 0.7142857371.4%
jalview.util.LinkedIdentityHashSet.IdentityWrapper   jalview.util.LinkedIdentityHashSet.IdentityWrapper 0.7142857371.4%
jalview.jbgui.GStructureViewer   jalview.jbgui.GStructureViewer 0.703296770.3%
jalview.gui.SplashScreen   jalview.gui.SplashScreen 0.701298770.1%
jalview.ws.jws2.jabaws2.Jws2InstanceFactory   jalview.ws.jws2.jabaws2.Jws2InstanceFactory 0.770%
jalview.workers.ConsensusThread   jalview.workers.ConsensusThread 0.696969769.7%
jalview.io.JalviewFileFilter   jalview.io.JalviewFileFilter 0.694444469.4%
jalview.json.binding.biojs.BioJSRepositoryPojo   jalview.json.binding.biojs.BioJSRepositoryPojo 0.687568.8%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.log.JalviewAppender   jalview.log.JalviewAppender 0.666666766.7%
jalview.ws.sifts.SiftsSettings   jalview.ws.sifts.SiftsSettings 0.666666766.7%
jalview.ws.utils.UrlDownloadClient   jalview.ws.utils.UrlDownloadClient 0.657142965.7%
jalview.ws.jws2.jabaws2.Jws2Instance   jalview.ws.jws2.jabaws2.Jws2Instance 0.643678264.4%
jalview.ws.jws2.JabaWsServerQuery   jalview.ws.jws2.JabaWsServerQuery 0.62562.5%
jalview.gui.JalviewDialog   jalview.gui.JalviewDialog 0.609756161%
jalview.util.MapUtils   jalview.util.MapUtils 0.608695660.9%
com.stevesoft.pat.SubMark   com.stevesoft.pat.SubMark 0.660%
jalview.jbgui.GAlignFrame   jalview.jbgui.GAlignFrame 0.581220758.1%
jalview.workers.ConservationThread   jalview.workers.ConservationThread 0.568965556.9%
jalview.jbgui.GDesktop   jalview.jbgui.GDesktop 0.561855756.2%
jalview.io.BioJsHTMLOutput   jalview.io.BioJsHTMLOutput 0.5656%
jalview.gui.BlogReader   jalview.gui.BlogReader 0.552486255.2%
jalview.gui.AssociatePdbFileWithSeq   jalview.gui.AssociatePdbFileWithSeq 0.5555%
com.stevesoft.pat.OrMark   com.stevesoft.pat.OrMark 0.5555%
mc_view.PDBChain   mc_view.PDBChain 0.5357142753.6%
jalview.util.MessageManager   jalview.util.MessageManager 0.5238095552.4%
com.stevesoft.pat.StrPos   com.stevesoft.pat.StrPos 0.523255852.3%
jalview.ext.jmol.JmolParser   jalview.ext.jmol.JmolParser 0.522666752.3%
jalview.jbgui.GStructureChooser   jalview.jbgui.GStructureChooser 0.5024752650.2%
jalview.viewmodel.ViewportProperties   jalview.viewmodel.ViewportProperties 0.550%
mc_view.Bond   mc_view.Bond 0.550%
com.stevesoft.pat.wrap.StringWrap   com.stevesoft.pat.wrap.StringWrap 0.550%
jalview.datamodel.ContactMapHolder   jalview.datamodel.ContactMapHolder 0.550%
jalview.schemes.TaylorColourScheme   jalview.schemes.TaylorColourScheme 0.550%
jalview.schemes.FlowerColourScheme   jalview.schemes.FlowerColourScheme 0.550%
jalview.schemes.ZappoColourScheme   jalview.schemes.ZappoColourScheme 0.550%
jalview.schemes.NucleotideAmbiguityColourScheme   jalview.schemes.NucleotideAmbiguityColourScheme 0.550%
jalview.schemes.PurinePyrimidineColourScheme   jalview.schemes.PurinePyrimidineColourScheme 0.550%
jalview.schemes.NucleotideColourScheme   jalview.schemes.NucleotideColourScheme 0.550%
jalview.schemes.BlossomColourScheme   jalview.schemes.BlossomColourScheme 0.550%
jalview.schemes.SunsetColourScheme   jalview.schemes.SunsetColourScheme 0.550%
jalview.schemes.OceanColourScheme   jalview.schemes.OceanColourScheme 0.550%
com.stevesoft.pat.oneChar   com.stevesoft.pat.oneChar 0.485714348.6%
com.stevesoft.pat.Range   com.stevesoft.pat.Range 0.4772727247.7%
jalview.gui.ColourMenuHelper   jalview.gui.ColourMenuHelper 0.466101746.6%
jalview.io.AlignFile   jalview.io.AlignFile 0.4589041245.9%
com.stevesoft.pat.Bracket   com.stevesoft.pat.Bracket 0.4545%
com.stevesoft.pat.FastMulti   com.stevesoft.pat.FastMulti 0.435185243.5%
jalview.gui.APQHandlers   jalview.gui.APQHandlers 0.434782643.5%
jalview.gui.Console   jalview.gui.Console 0.4288990842.9%
jalview.datamodel.HiddenCursorPosition   jalview.datamodel.HiddenCursorPosition 0.4285714342.9%
jalview.io.FileLoader   jalview.io.FileLoader 0.421404742.1%
jalview.util.ShortcutKeyMaskExWrapper11   jalview.util.ShortcutKeyMaskExWrapper11 0.4166666641.7%
jalview.analysis.AlignSeq   jalview.analysis.AlignSeq 0.4153846241.5%
jalview.ext.so.SequenceOntology   jalview.ext.so.SequenceOntology 0.412541.2%
jalview.datamodel.annotations.AnnotationRowBuilder   jalview.datamodel.annotations.AnnotationRowBuilder 0.4102564241%
jalview.util.Comparison   jalview.util.Comparison 0.4094488340.9%
jalview.ws.jws2.JabaPreset   jalview.ws.jws2.JabaPreset 0.409090940.9%
jalview.bin.Cache   jalview.bin.Cache 0.409090940.9%
org.json.simple.parser.Yylex   org.json.simple.parser.Yylex 0.4076433240.8%
jalview.schemes.ResidueColourScheme   jalview.schemes.ResidueColourScheme 0.404761940.5%
jalview.io.FileFormats   jalview.io.FileFormats 0.440%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.bin.ArgsParser   jalview.bin.ArgsParser 0.440%
jalview.schemes.HydrophobicColourScheme   jalview.schemes.HydrophobicColourScheme 0.440%
jalview.schemes.HelixColourScheme   jalview.schemes.HelixColourScheme 0.440%
jalview.schemes.TurnColourScheme   jalview.schemes.TurnColourScheme 0.440%
jalview.schemes.StrandColourScheme   jalview.schemes.StrandColourScheme 0.440%
jalview.schemes.BuriedColourScheme   jalview.schemes.BuriedColourScheme 0.440%
jalview.gui.ProgressBar   jalview.gui.ProgressBar 0.39837439.8%
jalview.io.StructureFile   jalview.io.StructureFile 0.390697739.1%
jalview.ws.jws2.Jws2Discoverer   jalview.ws.jws2.Jws2Discoverer 0.388118838.8%
jalview.gui.AppJmolBinding   jalview.gui.AppJmolBinding 0.3831775838.3%
jalview.workers.AlignCalcManager   jalview.workers.AlignCalcManager 0.380952438.1%
jalview.datamodel.FloatContactMatrix   jalview.datamodel.FloatContactMatrix 0.3838%
jalview.datamodel.Profile   jalview.datamodel.Profile 0.37537.5%
jalview.datamodel.ResidueCount   jalview.datamodel.ResidueCount 0.3745454537.5%
jalview.util.Format   jalview.util.Format 0.3685300436.9%
jalview.ws.datamodel.alphafold.PAEContactMatrix   jalview.ws.datamodel.alphafold.PAEContactMatrix 0.3628318636.3%
jalview.datamodel.AlignmentAnnotation   jalview.datamodel.AlignmentAnnotation 0.3612536.1%
jalview.io.FastaFile   jalview.io.FastaFile 0.3603603536%
jalview.jbgui.GStructureChooser.AssociateSeqPanel   jalview.jbgui.GStructureChooser.AssociateSeqPanel 0.352941235.3%
jalview.ws.jws2.MsaWSClient   jalview.ws.jws2.MsaWSClient 0.348993334.9%
org.json.simple.parser.JSONParser   org.json.simple.parser.JSONParser 0.3465346434.7%
jalview.datamodel.Annotation   jalview.datamodel.Annotation 0.3428571534.3%
com.stevesoft.pat.Pattern   com.stevesoft.pat.Pattern 0.340277834%
jalview.ws.jws1.Discoverer   jalview.ws.jws1.Discoverer 0.3397435834%
jalview.ext.jmol.JalviewJmolBinding   jalview.ext.jmol.JalviewJmolBinding 0.331983833.2%
jalview.gui.PromptUserConfig   jalview.gui.PromptUserConfig 0.3295454733%
jalview.gui.AlignmentPanel   jalview.gui.AlignmentPanel 0.3191990631.9%
jalview.ws.rest.RestServiceDescription   jalview.ws.rest.RestServiceDescription 0.31531.5%
jalview.gui.Desktop.MyDesktopPane   jalview.gui.Desktop.MyDesktopPane 0.3095238231%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.303633230.4%
jalview.structure.StructureSelectionManager   jalview.structure.StructureSelectionManager 0.3013333430.1%
jalview.gui.AppJmol   jalview.gui.AppJmol 0.2969924829.7%
jalview.gui.AlignViewport   jalview.gui.AlignViewport 0.2968036529.7%
com.stevesoft.pat.Or   com.stevesoft.pat.Or 0.294871829.5%
jalview.viewmodel.styles.ViewStyle   jalview.viewmodel.styles.ViewStyle 0.2929687529.3%
jalview.log.JLogger   jalview.log.JLogger 0.285714328.6%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
ext.vamsas.ServiceHandle   ext.vamsas.ServiceHandle 0.285714328.6%
jalview.schemes.JalviewColourScheme   jalview.schemes.JalviewColourScheme 0.285714328.6%
mc_view.Atom   mc_view.Atom 0.282051328.2%
jalview.gui.structurechooser.StructureChooserQuerySource   jalview.gui.structurechooser.StructureChooserQuerySource 0.2828%
jalview.io.IdentifyFile   jalview.io.IdentifyFile 0.276190527.6%
jalview.datamodel.PDBEntry   jalview.datamodel.PDBEntry 0.2731277627.3%
jalview.io.FileParse   jalview.io.FileParse 0.272980527.3%
jalview.util.Log4j   jalview.util.Log4j 0.2727272827.3%
jalview.viewmodel.ViewportRanges   jalview.viewmodel.ViewportRanges 0.2706270527.1%
jalview.util.HttpUtils   jalview.util.HttpUtils 0.263157926.3%
jalview.bin.Jalview   jalview.bin.Jalview 0.2617328526.2%
jalview.schemes.IdColourScheme   jalview.schemes.IdColourScheme 0.2608695626.1%
com.stevesoft.pat.Regex   com.stevesoft.pat.Regex 0.2536363625.4%
jalview.io.JalviewFileChooser   jalview.io.JalviewFileChooser 0.25340625.3%
jalview.io.gff.SequenceOntologyFactory   jalview.io.gff.SequenceOntologyFactory 0.2525%
jalview.ws.rest.params.Alignment   jalview.ws.rest.params.Alignment 0.2435897424.4%
jalview.bin.Console   jalview.bin.Console 0.236453223.6%
jalview.util.ErrorLog   jalview.util.ErrorLog 0.2352941223.5%
jalview.bin.BuildDetails   jalview.bin.BuildDetails 0.2352941223.5%
jalview.datamodel.SequenceCursor   jalview.datamodel.SequenceCursor 0.2333333323.3%
jalview.log.JLoggerLog4j   jalview.log.JLoggerLog4j 0.2330097123.3%
jalview.gui.PaintRefresher   jalview.gui.PaintRefresher 0.2323943723.2%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.2312925223.1%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.224806222.5%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.220543822.1%
jalview.viewmodel.AlignmentViewport   jalview.viewmodel.AlignmentViewport 0.2169954521.7%
jalview.util.MapList   jalview.util.MapList 0.2149532721.5%
jalview.gui.Desktop   jalview.gui.Desktop 0.2129840621.3%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.2127659621.3%
jalview.analysis.scoremodels.ScoreModels   jalview.analysis.scoremodels.ScoreModels 0.2115384621.2%
jalview.analysis.AAFrequency   jalview.analysis.AAFrequency 0.2088607520.9%
jalview.gui.BlogReader.LaunchJvBrowserOnItem   jalview.gui.BlogReader.LaunchJvBrowserOnItem 0.2083333320.8%
jalview.ws.rest.InputType   jalview.ws.rest.InputType 0.2056074720.6%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.2014388420.1%
jalview.gui.Desktop.MyDesktopManager   jalview.gui.Desktop.MyDesktopManager 0.220%
com.stevesoft.pat.patInt   com.stevesoft.pat.patInt 0.220%
jalview.bin.JalviewTaskbar   jalview.bin.JalviewTaskbar 0.220%
jalview.analysis.AnnotationSorter   jalview.analysis.AnnotationSorter 0.1970443319.7%
jalview.gui.StructureViewerBase   jalview.gui.StructureViewerBase 0.1929307919.3%
jalview.ws.datamodel.alphafold.MappableContactMatrix   jalview.ws.datamodel.alphafold.MappableContactMatrix 0.1924686119.2%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.191082819.1%
jalview.util.Platform   jalview.util.Platform 0.1886792518.9%
jalview.bin.argparser.BootstrapArgs   jalview.bin.argparser.BootstrapArgs 0.1859504118.6%
jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel   jalview.fts.core.FTSDataColumnPreferences.FTSDataColumnPrefsTableModel 0.1857142918.6%
jalview.util.ArgParserUtils   jalview.util.ArgParserUtils 0.1807228918.1%
jalview.schemes.TCoffeeColourScheme   jalview.schemes.TCoffeeColourScheme 0.1803278618%
jalview.schemes.Blosum62ColourScheme   jalview.schemes.Blosum62ColourScheme 0.176470617.6%
jalview.util.ChannelProperties   jalview.util.ChannelProperties 0.172413817.2%
jalview.structure.StructureImportSettings   jalview.structure.StructureImportSettings 0.1714285817.1%
jalview.structures.models.AAStructureBindingModel   jalview.structures.models.AAStructureBindingModel 0.1711292317.1%
jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer   jalview.jbgui.GStructureChooser.CustomComboSeparatorsRenderer 0.1666666716.7%
jalview.ws.dbsources.EBIAlfaFold   jalview.ws.dbsources.EBIAlfaFold 0.1604477616%
jalview.ws.jws1.WS1Client   jalview.ws.jws1.WS1Client 0.1616%
jalview.datamodel.Alignment   jalview.datamodel.Alignment 0.1471135914.7%
jalview.fts.core.FTSRestClient   jalview.fts.core.FTSRestClient 0.1467181414.7%
jalview.ws.jws2.JabaParamStore   jalview.ws.jws2.JabaParamStore 0.1458333314.6%
jalview.io.AppletFormatAdapter   jalview.io.AppletFormatAdapter 0.1428571514.3%
jalview.schemes.PIDColourScheme   jalview.schemes.PIDColourScheme 0.1333333413.3%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.1318523913.2%
jalview.ws.rest.params.SeqGroupIndexVector   jalview.ws.rest.params.SeqGroupIndexVector 0.12408759412.4%
jalview.io.FileFormat   jalview.io.FileFormat 0.1240310112.4%
jalview.util.StringUtils   jalview.util.StringUtils 0.1230769212.3%
jalview.io.FormatAdapter   jalview.io.FormatAdapter 0.1212%
jalview.structure.StructureCommand   jalview.structure.StructureCommand 0.1212%
jalview.ws.rest.RestClient   jalview.ws.rest.RestClient 0.11538461611.5%
jalview.util.ShortcutKeyMaskExWrapper   jalview.util.ShortcutKeyMaskExWrapper 0.1111111111.1%
jalview.schemes.ColourSchemeProperty   jalview.schemes.ColourSchemeProperty 0.1111111111.1%
jalview.schemes.RNAHelicesColour   jalview.schemes.RNAHelicesColour 0.1095890411%
jalview.datamodel.Mapping   jalview.datamodel.Mapping 0.10389610410.4%
jalview.analysis.scoremodels.ScoreMatrix   jalview.analysis.scoremodels.ScoreMatrix 0.1028806610.3%
jalview.ws.rest.params.AnnotationFile   jalview.ws.rest.params.AnnotationFile 0.10256410410.3%
jalview.util.QuickSort   jalview.util.QuickSort 0.10032362510%
com.stevesoft.pat.parsePerl   com.stevesoft.pat.parsePerl 0.098639469.9%
org.json.simple.parser.Yytoken   org.json.simple.parser.Yytoken 0.096774199.7%
jalview.gui.StructureChooser   jalview.gui.StructureChooser 0.0966628349.7%
jalview.workers.AlignCalcWorker   jalview.workers.AlignCalcWorker 0.09523819.5%
jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient   jalview.fts.service.threedbeacons.TDBeaconsFTSRestClient 0.093759.4%
jalview.util.JSONUtils   jalview.util.JSONUtils 0.090909099.1%
jalview.gui.StructureViewer   jalview.gui.StructureViewer 0.0891089148.9%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.util.CaseInsensitiveString   jalview.util.CaseInsensitiveString 0.086956528.7%
jalview.util.ColorUtils   jalview.util.ColorUtils 0.0860215058.6%
jalview.ws.jws2.Jws2Client   jalview.ws.jws2.Jws2Client 0.0843373468.4%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.urls.UrlProvider   jalview.urls.UrlProvider 0.079207927.9%
jalview.bin.argparser.ArgParser   jalview.bin.argparser.ArgParser 0.0751879667.5%
jalview.schemes.ColourSchemes   jalview.schemes.ColourSchemes 0.070175447%
jalview.gui.IdPanel   jalview.gui.IdPanel 0.067264576.7%
jalview.util.LaunchUtils   jalview.util.LaunchUtils 0.0661764746.6%
jalview.gui.IdwidthAdjuster   jalview.gui.IdwidthAdjuster 0.0657894766.6%
jalview.fts.service.pdb.PDBFTSRestClient   jalview.fts.service.pdb.PDBFTSRestClient 0.065502186.6%
com.stevesoft.pat.RegOpt   com.stevesoft.pat.RegOpt 0.06474826.5%
jalview.renderer.ResidueShader   jalview.renderer.ResidueShader 0.064285726.4%
jalview.analysis.CrossRef   jalview.analysis.CrossRef 0.063524596.4%
jalview.datamodel.DBRefEntry   jalview.datamodel.DBRefEntry 0.0616438356.2%
jalview.gui.AnnotationPanel   jalview.gui.AnnotationPanel 0.060924376.1%
jalview.gui.ViewSelectionMenu   jalview.gui.ViewSelectionMenu 0.059405945.9%
jalview.renderer.seqfeatures.FeatureColourFinder   jalview.renderer.seqfeatures.FeatureColourFinder 0.058823535.9%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.urls.CustomUrlProvider   jalview.urls.CustomUrlProvider 0.0569620245.7%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.gui.IdCanvas   jalview.gui.IdCanvas 0.052631585.3%
jalview.analysis.GeneticCodes   jalview.analysis.GeneticCodes 0.0496894425%
jalview.structure.StructureMapping   jalview.structure.StructureMapping 0.0466321264.7%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.045317224.5%
jalview.ext.jmol.JmolCommands   jalview.ext.jmol.JmolCommands 0.043307094.3%
jalview.analysis.AlignmentUtils   jalview.analysis.AlignmentUtils 0.0431286544.3%
jalview.gui.WsParamSetManager   jalview.gui.WsParamSetManager 0.0429447854.3%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource   jalview.gui.structurechooser.ThreeDBStructureChooserQuerySource 0.0390879473.9%
jalview.util.UrlLink   jalview.util.UrlLink 0.037878793.8%
org.json.simple.JSONObject   org.json.simple.JSONObject 0.037735853.8%
jalview.datamodel.ColumnSelection.IntList   jalview.datamodel.ColumnSelection.IntList 0.0373831763.7%
jalview.urls.IdentifiersUrlProvider   jalview.urls.IdentifiersUrlProvider 0.0366972463.7%
jalview.bin.Commands   jalview.bin.Commands 0.0364321623.6%
jalview.gui.ScalePanel   jalview.gui.ScalePanel 0.035156253.5%
jalview.bin.argparser.Arg   jalview.bin.argparser.Arg 0.033132533.3%
jalview.ws.jws1.JPredClient   jalview.ws.jws1.JPredClient 0.0310559013.1%
jalview.gui.SeqCanvas   jalview.gui.SeqCanvas 0.0290581162.9%
com.stevesoft.pat.RegRes   com.stevesoft.pat.RegRes 0.0289855082.9%
jalview.schemes.ClustalxColourScheme   jalview.schemes.ClustalxColourScheme 0.0254237282.5%
jalview.renderer.ResidueColourFinder   jalview.renderer.ResidueColourFinder 0.0238095242.4%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.gui.structurechooser.PDBStructureChooserQuerySource   jalview.gui.structurechooser.PDBStructureChooserQuerySource 0.017751481.8%
jalview.datamodel.HiddenColumnsCursor   jalview.datamodel.HiddenColumnsCursor 0.0156251.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.gui.SequenceRenderer   jalview.gui.SequenceRenderer 0.0144230771.4%
jalview.controller.AlignViewController   jalview.controller.AlignViewController 0.0136518771.4%
jalview.datamodel.SearchResults   jalview.datamodel.SearchResults 0.0128205131.3%
jalview.gui.SeqPanel   jalview.gui.SeqPanel 0.0125412541.3%
jalview.io.SequenceAnnotationReport   jalview.io.SequenceAnnotationReport 0.0122699381.2%
jalview.renderer.AnnotationRenderer   jalview.renderer.AnnotationRenderer 0.0117753621.2%
jalview.gui.AnnotationLabels   jalview.gui.AnnotationLabels 0.01150747951.2%
jalview.datamodel.HiddenSequences   jalview.datamodel.HiddenSequences 0.009132420.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.datamodel.GroupSet   jalview.datamodel.GroupSet 0.008620690.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
org.json.simple.JSONArray   org.json.simple.JSONArray 0.0080645160.8%
jalview.renderer.seqfeatures.FeatureRenderer   jalview.renderer.seqfeatures.FeatureRenderer 0.007547170.8%
jalview.gui.QuitHandler   jalview.gui.QuitHandler 0.00722021660.7%
jalview.datamodel.HiddenColumns   jalview.datamodel.HiddenColumns 0.0070754720.7%
jalview.gui.JvOptionPane   jalview.gui.JvOptionPane 0.0051480050.5%
jalview.datamodel.ColumnSelection   jalview.datamodel.ColumnSelection 0.00343642620.3%
com.stevesoft.pat.CaseMgr   com.stevesoft.pat.CaseMgr 0.00278551530.3%
jalview.schemes.ResidueProperties   jalview.schemes.ResidueProperties 0.00105042020.1%