Clover icon

Coverage Report

Test testLoadVCFContig

Test
testLoadVCFContig 1PASS 13 Nov 16:23:39 0.019
 
testLoadVCFContig
jalview.datamodel.features.FeatureSources   jalview.datamodel.features.FeatureSources 0.7575%
jalview.datamodel.features.FeatureSource   jalview.datamodel.features.FeatureSource 0.7142857371.4%
jalview.ws.SequenceFetcher   jalview.ws.SequenceFetcher 0.678571467.9%
jalview.ext.htsjdk.VCFReader   jalview.ext.htsjdk.VCFReader 0.674418667.4%
jalview.io.vcf.VCFLoader.VCFMap   jalview.io.vcf.VCFLoader.VCFMap 0.660%
jalview.datamodel.features.FeatureAttributes.AttributeData   jalview.datamodel.features.FeatureAttributes.AttributeData 0.531914953.2%
jalview.ws.dbsources.EmblSource   jalview.ws.dbsources.EmblSource 0.440%
jalview.io.vcf.VCFLoader   jalview.io.vcf.VCFLoader 0.3758064537.6%
jalview.ws.dbsources.EmblCdsSource   jalview.ws.dbsources.EmblCdsSource 0.285714328.6%
jalview.ext.htsjdk.HtsContigDb   jalview.ext.htsjdk.HtsContigDb 0.2727272827.3%
jalview.datamodel.features.FeatureAttributes   jalview.datamodel.features.FeatureAttributes 0.2403100724%
jalview.datamodel.features.FeatureStore   jalview.datamodel.features.FeatureStore 0.220543822.1%
jalview.datamodel.features.SequenceFeatures   jalview.datamodel.features.SequenceFeatures 0.2101910921%
jalview.util.MapList   jalview.util.MapList 0.1651090416.5%
jalview.datamodel.SequenceFeature   jalview.datamodel.SequenceFeature 0.1546762615.5%
jalview.ws.dbsources.Xfam   jalview.ws.dbsources.Xfam 0.086956528.7%
jalview.ext.ensembl.EnsemblSequenceFetcher   jalview.ext.ensembl.EnsemblSequenceFetcher 0.0833333368.3%
jalview.gui.Console   jalview.gui.Console 0.082568818.3%
jalview.gui.JvSwingUtils   jalview.gui.JvSwingUtils 0.074829937.5%
jalview.util.MessageManager   jalview.util.MessageManager 0.0714285757.1%
jalview.ws.seqfetcher.ASequenceFetcher   jalview.ws.seqfetcher.ASequenceFetcher 0.0577777775.8%
jalview.ws.seqfetcher.DbSourceProxyImpl   jalview.ws.seqfetcher.DbSourceProxyImpl 0.0540540555.4%
jalview.util.StringUtils   jalview.util.StringUtils 0.0461538474.6%
jalview.datamodel.Sequence   jalview.datamodel.Sequence 0.0449826984.5%
jalview.ws.dbsources.Pdb   jalview.ws.dbsources.Pdb 0.042553194.3%
jalview.bin.Cache   jalview.bin.Cache 0.0275482092.8%
jalview.util.MappingUtils   jalview.util.MappingUtils 0.0237068962.4%
jalview.util.DBRefUtils   jalview.util.DBRefUtils 0.0211480372.1%
jalview.gui.AlignFrame   jalview.gui.AlignFrame 0.015764961.6%
jalview.ws.dbsources.Uniprot   jalview.ws.dbsources.Uniprot 0.0155642021.6%
jalview.util.Platform   jalview.util.Platform 0.0094339620.9%
jalview.gui.SequenceFetcher   jalview.gui.SequenceFetcher 0.0089285720.9%
jalview.ext.ensembl.EnsemblGene   jalview.ext.ensembl.EnsemblGene 0.0081632650.8%
jalview.util.Comparison   jalview.util.Comparison 0.0078740160.8%