|
jalview.gui.FeatureRenderer
jalview.gui.FeatureRenderer
|
1.0100%
|
|
|
jalview.json.binding.biojson.v1.AnnotationDisplaySettingPojo
jalview.json.binding.biojson.v1.AnnotationDisplaySettingPojo
|
1.0100%
|
|
|
jalview.datamodel.HiddenCursorPosition
jalview.datamodel.HiddenCursorPosition
|
1.0100%
|
|
|
jalview.datamodel.ResidueCount.SymbolCounts
jalview.datamodel.ResidueCount.SymbolCounts
|
1.0100%
|
|
|
jalview.json.binding.biojson.v1.SequenceGrpPojo
jalview.json.binding.biojson.v1.SequenceGrpPojo
|
0.9595%
|
|
|
jalview.jbgui.GAlignmentPanel
jalview.jbgui.GAlignmentPanel
|
0.9494%
|
|
|
jalview.json.binding.biojson.v1.SequenceFeaturesPojo
jalview.json.binding.biojson.v1.SequenceFeaturesPojo
|
0.930232693%
|
|
|
jalview.json.binding.biojson.v1.AnnotationPojo
jalview.json.binding.biojson.v1.AnnotationPojo
|
0.990%
|
|
|
jalview.analysis.Conservation
jalview.analysis.Conservation
|
0.871921287.2%
|
|
|
jalview.json.binding.biojson.v1.SequencePojo
jalview.json.binding.biojson.v1.SequencePojo
|
0.818181881.8%
|
|
|
jalview.json.binding.biojson.v1.AlignmentAnnotationPojo
jalview.json.binding.biojson.v1.AlignmentAnnotationPojo
|
0.812581.2%
|
|
|
jalview.io.JSONFile
jalview.io.JSONFile
|
0.7874186678.7%
|
|
|
jalview.util.LinkedIdentityHashSet
jalview.util.LinkedIdentityHashSet
|
0.7727272577.3%
|
|
|
jalview.datamodel.Profiles
jalview.datamodel.Profiles
|
0.7333333573.3%
|
|
|
jalview.json.binding.biojson.v1.AlignmentPojo
jalview.json.binding.biojson.v1.AlignmentPojo
|
0.724137972.4%
|
|
|
jalview.util.LinkedIdentityHashSet.IdentityWrapper
jalview.util.LinkedIdentityHashSet.IdentityWrapper
|
0.7142857371.4%
|
|
|
jalview.workers.ConsensusThread
jalview.workers.ConsensusThread
|
0.696969769.7%
|
|
|
jalview.jbgui.GAlignFrame
jalview.jbgui.GAlignFrame
|
0.581220758.1%
|
|
|
jalview.workers.ConservationThread
jalview.workers.ConservationThread
|
0.568965556.9%
|
|
|
jalview.datamodel.HiddenColumnsCursor
jalview.datamodel.HiddenColumnsCursor
|
0.562556.2%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererSettings
jalview.viewmodel.seqfeatures.FeatureRendererSettings
|
0.5111111451.1%
|
|
|
jalview.viewmodel.ViewportProperties
jalview.viewmodel.ViewportProperties
|
0.550%
|
|
|
jalview.schemes.TaylorColourScheme
jalview.schemes.TaylorColourScheme
|
0.550%
|
|
|
jalview.schemes.FlowerColourScheme
jalview.schemes.FlowerColourScheme
|
0.550%
|
|
|
jalview.schemes.ZappoColourScheme
jalview.schemes.ZappoColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideAmbiguityColourScheme
jalview.schemes.NucleotideAmbiguityColourScheme
|
0.550%
|
|
|
jalview.schemes.PurinePyrimidineColourScheme
jalview.schemes.PurinePyrimidineColourScheme
|
0.550%
|
|
|
jalview.schemes.NucleotideColourScheme
jalview.schemes.NucleotideColourScheme
|
0.550%
|
|
|
jalview.schemes.BlossomColourScheme
jalview.schemes.BlossomColourScheme
|
0.550%
|
|
|
jalview.schemes.SunsetColourScheme
jalview.schemes.SunsetColourScheme
|
0.550%
|
|
|
jalview.schemes.OceanColourScheme
jalview.schemes.OceanColourScheme
|
0.550%
|
|
|
jalview.datamodel.Profile
jalview.datamodel.Profile
|
0.464285746.4%
|
|
|
jalview.gui.ColourMenuHelper
jalview.gui.ColourMenuHelper
|
0.4322033843.2%
|
|
|
org.json.simple.parser.Yylex
org.json.simple.parser.Yylex
|
0.4171974741.7%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper11
jalview.util.ShortcutKeyMaskExWrapper11
|
0.4166666641.7%
|
|
|
jalview.schemes.HydrophobicColourScheme
jalview.schemes.HydrophobicColourScheme
|
0.440%
|
|
|
jalview.schemes.HelixColourScheme
jalview.schemes.HelixColourScheme
|
0.440%
|
|
|
jalview.schemes.TurnColourScheme
jalview.schemes.TurnColourScheme
|
0.440%
|
|
|
jalview.schemes.StrandColourScheme
jalview.schemes.StrandColourScheme
|
0.440%
|
|
|
jalview.schemes.BuriedColourScheme
jalview.schemes.BuriedColourScheme
|
0.440%
|
|
|
jalview.datamodel.AlignExportSettingsAdapter
jalview.datamodel.AlignExportSettingsAdapter
|
0.384615438.5%
|
|
|
jalview.datamodel.ResidueCount
jalview.datamodel.ResidueCount
|
0.3818181838.2%
|
|
|
jalview.workers.AlignCalcManager
jalview.workers.AlignCalcManager
|
0.380952438.1%
|
|
|
jalview.io.AlignFile
jalview.io.AlignFile
|
0.3767123237.7%
|
|
|
jalview.schemes.ResidueColourScheme
jalview.schemes.ResidueColourScheme
|
0.3571428735.7%
|
|
|
jalview.analysis.AAFrequency
jalview.analysis.AAFrequency
|
0.3502109635%
|
|
|
jalview.util.Comparison
jalview.util.Comparison
|
0.3346456633.5%
|
|
|
org.json.simple.parser.JSONParser
org.json.simple.parser.JSONParser
|
0.3193069431.9%
|
|
|
jalview.renderer.seqfeatures.FeatureColourFinder
jalview.renderer.seqfeatures.FeatureColourFinder
|
0.313725531.4%
|
|
|
jalview.util.MessageManager
jalview.util.MessageManager
|
0.3095238231%
|
|
|
jalview.viewmodel.styles.ViewStyle
jalview.viewmodel.styles.ViewStyle
|
0.3007812530.1%
|
|
|
jalview.io.FileParse
jalview.io.FileParse
|
0.2980501429.8%
|
|
|
jalview.schemes.JalviewColourScheme
jalview.schemes.JalviewColourScheme
|
0.285714328.6%
|
|
|
jalview.datamodel.features.FeatureStore
jalview.datamodel.features.FeatureStore
|
0.2628398826.3%
|
|
|
jalview.gui.AlignViewport
jalview.gui.AlignViewport
|
0.2579908725.8%
|
|
|
org.json.JSONObject.Null
org.json.JSONObject.Null
|
0.2525%
|
|
|
jalview.gui.JalviewChangeSupport
jalview.gui.JalviewChangeSupport
|
0.2525%
|
|
|
jalview.viewmodel.seqfeatures.FeaturesDisplayed
jalview.viewmodel.seqfeatures.FeaturesDisplayed
|
0.2525%
|
|
|
jalview.datamodel.Sequence
jalview.datamodel.Sequence
|
0.2430795924.3%
|
|
|
jalview.datamodel.features.SequenceFeatures
jalview.datamodel.features.SequenceFeatures
|
0.235668823.6%
|
|
|
jalview.datamodel.SequenceCursor
jalview.datamodel.SequenceCursor
|
0.2333333323.3%
|
|
|
jalview.gui.AlignmentPanel
jalview.gui.AlignmentPanel
|
0.2273262622.7%
|
|
|
org.json.JSONObject
org.json.JSONObject
|
0.2235965722.4%
|
|
|
jalview.viewmodel.AlignmentViewport
jalview.viewmodel.AlignmentViewport
|
0.2147192721.5%
|
|
|
jalview.io.FileFormats
jalview.io.FileFormats
|
0.220%
|
|
|
jalview.analysis.AnnotationSorter
jalview.analysis.AnnotationSorter
|
0.1970443319.7%
|
|
|
jalview.schemes.ColourSchemeProperty
jalview.schemes.ColourSchemeProperty
|
0.1944444519.4%
|
|
|
jalview.util.JSONUtils
jalview.util.JSONUtils
|
0.1818181918.2%
|
|
|
jalview.util.Format
jalview.util.Format
|
0.1780538317.8%
|
|
|
jalview.schemes.IdColourScheme
jalview.schemes.IdColourScheme
|
0.1739130517.4%
|
|
|
jalview.datamodel.Alignment
jalview.datamodel.Alignment
|
0.1508379915.1%
|
|
|
jalview.viewmodel.ViewportRanges
jalview.viewmodel.ViewportRanges
|
0.1485148514.9%
|
|
|
jalview.schemes.TCoffeeColourScheme
jalview.schemes.TCoffeeColourScheme
|
0.1475409914.8%
|
|
|
jalview.gui.PaintRefresher
jalview.gui.PaintRefresher
|
0.1408450814.1%
|
|
|
jalview.datamodel.SequenceGroup
jalview.datamodel.SequenceGroup
|
0.1391830613.9%
|
|
|
jalview.datamodel.AlignmentAnnotation
jalview.datamodel.AlignmentAnnotation
|
0.137513.8%
|
|
|
jalview.datamodel.HiddenSequences
jalview.datamodel.HiddenSequences
|
0.132420113.2%
|
|
|
jalview.datamodel.HiddenColumns
jalview.datamodel.HiddenColumns
|
0.127358512.7%
|
|
|
jalview.io.AppletFormatAdapter
jalview.io.AppletFormatAdapter
|
0.12422360512.4%
|
|
|
jalview.schemes.Blosum62ColourScheme
jalview.schemes.Blosum62ColourScheme
|
0.1176470611.8%
|
|
|
jalview.gui.JvSwingUtils
jalview.gui.JvSwingUtils
|
0.1156462611.6%
|
|
|
jalview.analysis.scoremodels.ScoreModels
jalview.analysis.scoremodels.ScoreModels
|
0.11538461611.5%
|
|
|
jalview.renderer.ResidueShader
jalview.renderer.ResidueShader
|
0.11428571511.4%
|
|
|
jalview.datamodel.Annotation
jalview.datamodel.Annotation
|
0.11428571511.4%
|
|
|
jalview.util.ShortcutKeyMaskExWrapper
jalview.util.ShortcutKeyMaskExWrapper
|
0.1111111111.1%
|
|
|
jalview.io.FileFormat
jalview.io.FileFormat
|
0.1085271310.9%
|
|
|
jalview.json.binding.biojson.v1.ColourSchemeMapper
jalview.json.binding.biojson.v1.ColourSchemeMapper
|
0.096774199.7%
|
|
|
org.json.simple.parser.Yytoken
org.json.simple.parser.Yytoken
|
0.096774199.7%
|
|
|
jalview.util.ColorUtils
jalview.util.ColorUtils
|
0.096774199.7%
|
|
|
jalview.workers.AlignCalcWorker
jalview.workers.AlignCalcWorker
|
0.09523819.5%
|
|
|
jalview.datamodel.SequenceFeature
jalview.datamodel.SequenceFeature
|
0.0863309358.6%
|
|
|
jalview.util.Platform
jalview.util.Platform
|
0.084905668.5%
|
|
|
jalview.gui.Console
jalview.gui.Console
|
0.082568818.3%
|
|
|
jalview.schemes.RNAHelicesColour
jalview.schemes.RNAHelicesColour
|
0.082191788.2%
|
|
|
jalview.gui.ProgressBar
jalview.gui.ProgressBar
|
0.081300818.1%
|
|
|
jalview.schemes.ColourSchemes
jalview.schemes.ColourSchemes
|
0.070175447%
|
|
|
org.json.JSONArray
org.json.JSONArray
|
0.0691489356.9%
|
|
|
jalview.gui.AlignFrame
jalview.gui.AlignFrame
|
0.068434256.8%
|
|
|
jalview.gui.IdPanel
jalview.gui.IdPanel
|
0.067264576.7%
|
|
|
jalview.schemes.PIDColourScheme
jalview.schemes.PIDColourScheme
|
0.066666676.7%
|
|
|
jalview.log.JLogger
jalview.log.JLogger
|
0.065934076.6%
|
|
|
jalview.gui.IdwidthAdjuster
jalview.gui.IdwidthAdjuster
|
0.0657894766.6%
|
|
|
jalview.analysis.CrossRef
jalview.analysis.CrossRef
|
0.063524596.4%
|
|
|
jalview.analysis.scoremodels.ScoreMatrix
jalview.analysis.scoremodels.ScoreMatrix
|
0.0617283966.2%
|
|
|
jalview.gui.ViewSelectionMenu
jalview.gui.ViewSelectionMenu
|
0.059405945.9%
|
|
|
jalview.analysis.GeneticCodes
jalview.analysis.GeneticCodes
|
0.0496894425%
|
|
|
jalview.bin.Console
jalview.bin.Console
|
0.0492610824.9%
|
|
|
jalview.datamodel.SecondaryStructureCount
jalview.datamodel.SecondaryStructureCount
|
0.0468754.7%
|
|
|
jalview.gui.AnnotationPanel
jalview.gui.AnnotationPanel
|
0.044117654.4%
|
|
|
jalview.bin.Cache
jalview.bin.Cache
|
0.0385674953.9%
|
|
|
org.json.simple.JSONObject
org.json.simple.JSONObject
|
0.037735853.8%
|
|
|
jalview.datamodel.ColumnSelection.IntList
jalview.datamodel.ColumnSelection.IntList
|
0.0373831763.7%
|
|
|
jalview.structure.StructureSelectionManager
jalview.structure.StructureSelectionManager
|
0.0373333323.7%
|
|
|
jalview.gui.IdCanvas
jalview.gui.IdCanvas
|
0.0245614032.5%
|
|
|
jalview.util.DBRefUtils
jalview.util.DBRefUtils
|
0.0241691842.4%
|
|
|
jalview.renderer.ResidueColourFinder
jalview.renderer.ResidueColourFinder
|
0.0238095242.4%
|
|
|
jalview.viewmodel.seqfeatures.FeatureRendererModel
jalview.viewmodel.seqfeatures.FeatureRendererModel
|
0.023474182.3%
|
|
|
jalview.gui.ScalePanel
jalview.gui.ScalePanel
|
0.02343752.3%
|
|
|
jalview.schemes.ClustalxColourScheme
jalview.schemes.ClustalxColourScheme
|
0.0169491531.7%
|
|
|
jalview.gui.SequenceRenderer
jalview.gui.SequenceRenderer
|
0.0144230771.4%
|
|
|
jalview.controller.AlignViewController
jalview.controller.AlignViewController
|
0.0136518771.4%
|
|
|
jalview.analysis.AlignSeq
jalview.analysis.AlignSeq
|
0.0128205131.3%
|
|
|
jalview.gui.SeqPanel
jalview.gui.SeqPanel
|
0.0125412541.3%
|
|
|
jalview.io.SequenceAnnotationReport
jalview.io.SequenceAnnotationReport
|
0.0122699381.2%
|
|
|
jalview.gui.AnnotationLabels
jalview.gui.AnnotationLabels
|
0.01150747951.2%
|
|
|
org.json.simple.JSONArray
org.json.simple.JSONArray
|
0.0080645160.8%
|
|
|
jalview.gui.SeqCanvas
jalview.gui.SeqCanvas
|
0.0080160320.8%
|
|
|
jalview.renderer.seqfeatures.FeatureRenderer
jalview.renderer.seqfeatures.FeatureRenderer
|
0.007547170.8%
|
|
|
jalview.bin.Jalview
jalview.bin.Jalview
|
0.00451263550.5%
|
|
|
jalview.analysis.AlignmentUtils
jalview.analysis.AlignmentUtils
|
0.0043859650.4%
|
|
|
jalview.renderer.AnnotationRenderer
jalview.renderer.AnnotationRenderer
|
0.00362318850.4%
|
|
|
jalview.datamodel.ColumnSelection
jalview.datamodel.ColumnSelection
|
0.00343642620.3%
|
|
|
jalview.gui.Desktop
jalview.gui.Desktop
|
0.00227790440.2%
|
|
