Jim Procter <j.procter@dundee.ac.uk>: Author Summary

Builds triggered by Jim Procter <j.procter@dundee.ac.uk>

Builds triggered by an author are those builds which contains changes committed by the author.
8
1 (12%)
7 (88%)

Breakages and fixes

Broken means the build has failed but the previous build was successful.
Fixed means that the build was successful but the previous build has failed.
0 (0% of all builds triggered)
0 (0% of all builds triggered)
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Build Completed Code commits Tests
JB › GDC › #72 1 week ago
Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !
JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3
Testless build
JB › GDB › #400 1 week ago
JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3
JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !
Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3
Merge branch 'develop' into releases/Release_2_11_2_Branch
2 of 1446 failed
JB › GJB › #196 1 week ago
Merge branch 'patch/JAL-4008_jabaws_2_2_1_patch' into doc/release_2_11_2_3
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-4012 JAL-4008 release notes for Jalview 2.11.2.3
JAL-4008 update jabaws client to 2.2.1 - definitely no log4j references !
Testless build
JB › GPC › #146 1 month ago
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3992 shift+arrow to jump to next gap/residue in cursor/keyboard editing mode
JAL-3997 check for tooltip being null before checking equivalence to last tooltip string
Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm' into develop
JAL-3992 bump version and report updates in 2.11.2.2 release notes
JAL-3992 fix path
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into develop
JAL-3990 release notes and what’s new
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'task/JAL-3992_update_docs' into bug/JAL-3365_extendedDSSP_via_stockholm
JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files
Testless build
JB › GJB › #195 1 month ago
JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3990 release notes and what’s new
JAL-3992 shift+arrow to jump to next gap/residue in cursor/keyboard editing mode
Merge branch 'task/JAL-3992_update_docs' into bug/JAL-3365_extendedDSSP_via_stockholm
JAL-3992 bump version and report updates in 2.11.2.2 release notes
Merge branch 'bug/JAL-3365_extendedDSSP_via_stockholm' into develop
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'bug/JAL-3997_NPE_in_wrapped_mode' into develop
JAL-3992 fix path
JAL-3997 check for tooltip being null before checking equivalence to last tooltip string
Testless build
JB › GPC › #145 1 month ago
JAL-3981 strategic newlines to help speed up Java's html parser
JAL-3985 split PDB id queries into multiple queries so server doesn’t 414
JAL-3990 gradle spotlessApply
Merge branch 'bug/JAL-3085_avoid_414_error_for_PDBFTS' into develop
Merge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_details' into develop
JAL-3981 Additional line breaks - sort of helps
JAL-3985 formatting
JAL-3983 release note for JAL-3985
JAL-3990 release notes for 2.11.2.1 patch release
JAL-3981 patch tests and remove errant imports
JAL-3085 update tests and mock responses, new P0dtd1 testcase
JAL-3980 defensive copy - inefficient but fixes bug
Testless build
JB › GDI › #8 6 months ago
JAL-3821 ported to refactored FlatFile parser
JAL-3829 - callback finessing - leave DBRefFetcher to do progress updates itself
JAL-3616 show name of structure viewer in ‘new view’ button
JAL-3881 split on any nonalphanumeric symbol (plus _) to generate putative sequence identifiers with which to query databases
JAL-3829 fetch 3D beacons now started by clicking button shown above the drop-down filter/manual input combo box.
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
JAL-3829 prefix PDBe filters with PDBe to make clear what they search
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 TDBeacons fetcher needs a sequence with at least one canonical uniprot accession
JAL-3829 updated response for P01308
Merge branch 'features/r2_11_2/JAL-3821_reinstate_patch' into develop
JAL-3829 3d beacons logo - misi varadi gave permission to re-use but most likely it is CC-0
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 alternative UX: need to select 3d-beacons from dropdown if db-refs need to be fetched
JAL-3829 do better at detecting structure type, prompt to retrieve Uniprot ids for proteins without canonical Ids and show provider in the Structure Chooser’s cache view
JAL-3821 less ambiguous base class name for EMBL and GenBank flat file parsers
Merge branch 'develop' into doc/JAL-3746_Release_2_11_2
JAL-3692 JAL-3861 remove extra call to .parse() so we don’t process the file again
JAL-3079 JAL-3055 remember to reset font transform after rendering logo
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
JAL-3904 override buildActionMenu to add in additional menu actions after rebuild
JAL-3829 abstract essential TDB metadata from the user configurable data array displayed in the JTable
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label/description
JAL-3746 update the example corefile for jalviewjs
JAL-3829 throw the exception even if it has no message
JAL-3829 tests need to wait for dialog to be closed and background processes to finish before they can check functionality
JAL-3829 store 3db metadata on PDBEntry so it can be shown in Cache/etc
JAL-3829 ignore the fake ID generated when a PDB format file without embedded ID is imported for an existing PDBEntry
JAL-3616 explicit configure external viewer config
JAL-3829 right click to view popup menu to show link - maybe better to have a link button in the table instead ?
Merge branch 'patch/JAL-3874_newJmolAndGradleDedup' into develop
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 report when 3d-beacons doesn’t provide any models
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 open web page for 3d beacons structure by right-clicking and selecting pop up menu item
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3874 - replace Jmol with custom build of 14.31.53 from Jmol-SwingJS GitHub repo
JAL-3904 failing test
JAL-3821 failing test
JAL-3829 allow PDBEntry with file and ID with mismatching case to override one without a file
Merge branch 'doc/JAL-3746_Release_2_11_2' into develop
JAL-3884 squish alarming but harmless errors when uniprot doesn’t have a record
JAL-3829 make sure structure data type reflects actual format identified
JAL-3905 Fix: wait for response when sending mouseovers. Combined remove old label and add new label and also added warning in javadoc about out-of-order execution
JAL-3829 belt and braces check to make sure there is a pdbe response available to join records from
Merge branch 'bug/JAL-3885_sequence_fetched_not_displaying_PFAM_Seed' into develop
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
JAL-2226 transfer chain annotation when calcId, label and description are distinct - so annotations from multiple chains and structures are all shown.
Merge branch 'bug/r2_11_2/JAL-3904_structureviewermenu' into develop
JAL-2226 new method to search for annotation matching particular description as well as calcId and label
JAL-3746 release notes and what’s new for 2.11.2 - in progress
JAL-3821 data file for failing test
Testless build
JB › GTC › #3 7 months ago
JAL-3829 store 3db metadata on PDBEntry so it can be shown in Cache/etc
JAL-3829 right click to view popup menu to show link - maybe better to have a link button in the table instead ?
JAL-3829 ignore the fake ID generated when a PDB format file without embedded ID is imported for an existing PDBEntry
JAL-3829 tests need to wait for dialog to be closed and background processes to finish before they can check functionality
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 throw the exception even if it has no message
JAL-3616 explicit configure external viewer config
Merge branch 'patch/JAL-3874_newJmolAndGradleDedup' into develop
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 open web page for 3d beacons structure by right-clicking and selecting pop up menu item
JAL-3829 report when 3d-beacons doesn’t provide any models
JAL-3874 - replace Jmol with custom build of 14.31.53 from Jmol-SwingJS GitHub repo
JAL-3905 Fix: wait for response when sending mouseovers. Combined remove old label and add new label and also added warning in javadoc about out-of-order execution
JAL-3829 make sure structure data type reflects actual format identified
Merge branch 'doc/JAL-3746_Release_2_11_2' into develop
JAL-3904 failing test
Merge branch 'bug/JAL-3885_sequence_fetched_not_displaying_PFAM_Seed' into develop
JAL-3821 failing test
JAL-2226 transfer chain annotation when calcId, label and description are distinct - so annotations from multiple chains and structures are all shown.
JAL-3829 allow PDBEntry with file and ID with mismatching case to override one without a file
JAL-3884 squish alarming but harmless errors when uniprot doesn’t have a record
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
JAL-3829 belt and braces check to make sure there is a pdbe response available to join records from
JAL-3746 release notes and what’s new for 2.11.2 - in progress
Merge branch 'bug/r2_11_2/JAL-3904_structureviewermenu' into develop
JAL-3821 data file for failing test
JAL-2226 new method to search for annotation matching particular description as well as calcId and label
Merge branch 'develop' into releases/Release_2_11_2_Branch
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 fetch 3D beacons now started by clicking button shown above the drop-down filter/manual input combo box.
JAL-3616 show name of structure viewer in ‘new view’ button
JAL-3829 prefix PDBe filters with PDBe to make clear what they search
JAL-3881 split on any nonalphanumeric symbol (plus _) to generate putative sequence identifiers with which to query databases
JAL-3829 - callback finessing - leave DBRefFetcher to do progress updates itself
JAL-3829 TDBeacons fetcher needs a sequence with at least one canonical uniprot accession
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
JAL-3821 ported to refactored FlatFile parser
JAL-3829 3d beacons logo - misi varadi gave permission to re-use but most likely it is CC-0
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 updated response for P01308
Merge branch 'features/r2_11_2/JAL-3821_reinstate_patch' into develop
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
JAL-3829 alternative UX: need to select 3d-beacons from dropdown if db-refs need to be fetched
Merge branch 'develop' into releases/Release_2_11_2_Branch
JAL-3829 do better at detecting structure type, prompt to retrieve Uniprot ids for proteins without canonical Ids and show provider in the Structure Chooser’s cache view
Merge branch 'develop' into doc/JAL-3746_Release_2_11_2
JAL-3821 less ambiguous base class name for EMBL and GenBank flat file parsers
JAL-3079 JAL-3055 remember to reset font transform after rendering logo
JAL-3692 JAL-3861 remove extra call to .parse() so we don’t process the file again
JAL-3904 override buildActionMenu to add in additional menu actions after rebuild
JAL-3829 abstract essential TDB metadata from the user configurable data array displayed in the JTable
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
JAL-3746 update the example corefile for jalviewjs
JAL-3829 ensure nulls are not wildcards when retrieving annotation by calcId/label/description
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons' into develop
Testless build
Build Completed Code commits Tests
Build Completed Code commits Tests