James Procter <j.procter@dundee.ac.uk>: Author Profile

James Procter <j.procter@dundee.ac.uk>: Author Summary

Builds triggered by James Procter <j.procter@dundee.ac.uk>

Builds triggered by an author are those builds which contains changes committed by the author.

All builds triggered 5

Failed builds 1 (20%)

Successful jobs 4 (80%)

Breakages and fixes

Broken means the build has failed but the previous build was successful.
Fixed means that the build was successful but the previous build has failed.

Broken by author 1 (20% of all builds triggered)

Fixed by author 0 (0% of all builds triggered)

Difference of fixes and breaks -1

Build	Completed	Code commits	Tests
JB › GDBI › #21	1 year ago	details Merge branch 'bug/JAL-4186_space_in_sequence_name_causes_empty_modal' into develop	Testless build
JB › GDC › #217	6 days ago	details JAL-4216 compute size of annotation using start/end of sequence and given length. This might not work... JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview Plausible analytics Merge branch 'task/JAL-4001_Release_2_11_2_Branch_with_Plausible' into releases/Release_2_11_2_Branch Merge branch 'releases/Release_2_11_3_Branch' Merge branch 'develop' into releases/Release_2_11_4_Branch JAL-4117 JAL-4001 plausible analytics release notes and privacy docs Merge branch 'patch/JAL-4216_negative_startend' into releases/Release_2_11_2_Branch Merge branch 'task/JAL-4001_Release_2_11_2_Branch_with_Plausible' into releases/Release_2_11_2_Branch Merge branch 'develop' into releases/Release_2_11_4_Branch JAL-4216 release notes Merge branch 'develop' into releases/Release_2_11_4_Branch Merge branch 'releases/Release_2_11_3_Branch' Merge branch 'develop' into releases/Release_2_11_4_Branch Merge branch 'releases/Release_2_11_3_Branch' Merge branch 'releases/Release_2_11_4_Branch' JAL-4001 analytics url provided by https://www.jalview.org/services/config/analytics/url JAL-4117 JAL-1551 source licensing	Testless build
JB › GTC › #17	1 week ago	details JAL-4001 analytics url provided by https://www.jalview.org/services/config/analytics/url Merge branch 'task/JAL-4001_Release_2_11_2_Branch_with_Plausible' into releases/Release_2_11_2_Branch JAL-4117 JAL-1551 source licensing Merge branch 'develop' into releases/Release_2_11_4_Branch JAL-4216 compute size of annotation using start/end of sequence and given length. This might not work... Merge branch 'develop' into releases/Release_2_11_4_Branch Merge branch 'releases/Release_2_11_3_Branch' Merge branch 'releases/Release_2_11_3_Branch' Merge branch 'patch/JAL-4216_negative_startend' into releases/Release_2_11_2_Branch Merge branch 'releases/Release_2_11_4_Branch' Merge branch 'develop' into releases/Release_2_11_4_Branch JAL-4216 release notes Merge branch 'task/JAL-4001_Release_2_11_2_Branch_with_Plausible' into releases/Release_2_11_2_Branch Merge branch 'releases/Release_2_11_3_Branch' JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview Plausible analytics Merge branch 'develop' into releases/Release_2_11_4_Branch JAL-4117 JAL-4001 plausible analytics release notes and privacy docs	Testless build
JB › GGR › #7	1 year ago	details JAL-629 JAL-4124 JAL-3855 test to check we can import PAE matrices in a variety of formats - and fix up a casting issue (again?) Merge branch 'develop' into feature/JAL-1713_overviewInProject JAL-4133 store/restore alignment view’s charWidth and charHeight in Jalview project Merge branch 'features/JAL-3858_PAEsInProjects' into develop Merge branch 'new_feature/JAL-4019_ambiguous_base_colourscheme' into develop JAL-3858 construct a PAE direct from float array JAL-3858 JAL-2381 allow different linear shading schemes for selected/non-selected regions of contact matrix heat map Merge branch 'develop' into features/r2_11_2_alphafold/JAL-2349_JAL-3855 Passing test for JAL-4127 failing on the JAL-1713 branch JAL-4090 Release 2.11.3.0 release notes and version bump JAL-1713 update from Jalview 2.11.3 develop Merge branch 'develop' into feature/JAL-1713_overviewInProject regenerated jaxb classes to resolve conflicts JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MATRIX annotation.graph type, with actual matrix type stored in calcId JAL-629 don’t complain for Unary args JAL-4090 move 2.11.3 series release notes to 2.11.3.0 release and premptively list issues already or nearly addressed in this version JAL-4095 slightly better threshold setting and todos for improvement JAL-629 suggest not breaking out of the structure processing loop if just one structure has a bunk sequence association.. JAL-4133 update validChar width when font is changed so characters are suppressed for small widths Fix for JAL-4126 - don’t automatically create a threshold line when no threshold line is needed when reconstructing the annotation colour scheme from a project file Merge branch 'develop' (JAL-4102 2.11.2.6 patch release) into features/r2_11_2_alphafold/JAL-2349_JAL-3855 JAL-1551 source formatting JAL-629 hacked in --tempfac-shading - hardcoded to use existing colours in per-sequence annotation JAL-3077 broken conflict resolve resulted in failing test (nb - still not resolved the issue of (promoted) dbrefs!) JAL-629 labelled breaks are frowned upon by everyone JAL-3858 new MatrixType JAX-RI POJO JAL-3858 persist PAE matrix (only so far) as serialised floats in element on dataset sequence annotation. Rudimentary tests. Merge branch 'features/r2_11_2_alphafold/JAL-629' into features/JAL-3858_PAEsInProjects Conflicts: src/jalview/bin/Jalview.java JAL-1713 don’t close an automatically created overview window for projects from Jalview versions older than 2.11.3 JAL-4126 comment out closeAll - so we can visually check the alignment frame as it is restored JAL-629 don’t trash user’s system property file when adjusting settings to process CL args JAL-4116 relegate the failed to promote warning to Console.debug so most users won’t even see it (or be slowed down by it). JAL-629 need to delay call to AlignFile.parse() if StructureFile needs to configure itself at construction time Merge branch 'features/r2_11_2_alphafold/JAL-629' into features/JAL-3858_PAEsInProjects Conflicts: src/jalview/bin/Jalview.java Merge branch 'develop' into feature/JAL-1713_overviewInProject JAL-4126 failing test - colour scheme appears to be being created and configured, but the renderer is not actually using the colour scheme to shade the sequence when the project is restored. JAL-629 JAL-4124 JAL-3855 test to check we can import PAE matrices in a variety of formats - additional test case JAL-4104 JAL-4102 update help docs with script to add jalview command line tool to osx path Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064' into develop JAL-3858 simple test for PAE matrix recovery Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL-3855' into features/r2_11_2_alphafold/JAL-629 JAL-1551 remove temp file in src JAL-629 make sure we show GUI when not driven programmatically JAL-4095 magic fill behaviour is PAE specific JAL-629 don’t carry on Jalview.main if we’ve already processed command line args another way	Testless build
JB › GDI › #11	1 year ago	details JAL-1713 don’t close an automatically created overview window for projects from Jalview versions older than 2.11.3 JAL-4116 relegate the failed to promote warning to Console.debug so most users won’t even see it (or be slowed down by it). JAL-4126 comment out closeAll - so we can visually check the alignment frame as it is restored JAL-3077 broken conflict resolve resulted in failing test (nb - still not resolved the issue of (promoted) dbrefs!) Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064' into develop JAL-4126 failing test - colour scheme appears to be being created and configured, but the renderer is not actually using the colour scheme to shade the sequence when the project is restored. JAL-4104 JAL-4102 update help docs with script to add jalview command line tool to osx path Merge branch 'develop' into feature/JAL-1713_overviewInProject Merge branch 'new_feature/JAL-4019_ambiguous_base_colourscheme' into develop Merge branch 'develop' into feature/JAL-1713_overviewInProject JAL-1551 remove temp file in src Merge branch 'develop' into features/r2_11_2_alphafold/JAL-2349_JAL-3855 JAL-4090 move 2.11.3 series release notes to 2.11.3.0 release and premptively list issues already or nearly addressed in this version Passing test for JAL-4127 failing on the JAL-1713 branch JAL-1713 update from Jalview 2.11.3 develop Merge branch 'develop' into feature/JAL-1713_overviewInProject regenerated jaxb classes to resolve conflicts JAL-4090 Release 2.11.3.0 release notes and version bump Merge branch 'develop' (JAL-4102 2.11.2.6 patch release) into features/r2_11_2_alphafold/JAL-2349_JAL-3855 Fix for JAL-4126 - don’t automatically create a threshold line when no threshold line is needed when reconstructing the annotation colour scheme from a project file	Testless build

Build	Completed	Code commits	Tests
JB › GGR › #7	1 year ago	details JAL-629 JAL-4124 JAL-3855 test to check we can import PAE matrices in a variety of formats - and fix up a casting issue (again?) Merge branch 'develop' into feature/JAL-1713_overviewInProject JAL-4133 store/restore alignment view’s charWidth and charHeight in Jalview project Merge branch 'features/JAL-3858_PAEsInProjects' into develop Merge branch 'new_feature/JAL-4019_ambiguous_base_colourscheme' into develop JAL-3858 construct a PAE direct from float array JAL-3858 JAL-2381 allow different linear shading schemes for selected/non-selected regions of contact matrix heat map Merge branch 'develop' into features/r2_11_2_alphafold/JAL-2349_JAL-3855 Passing test for JAL-4127 failing on the JAL-1713 branch JAL-4090 Release 2.11.3.0 release notes and version bump JAL-1713 update from Jalview 2.11.3 develop Merge branch 'develop' into feature/JAL-1713_overviewInProject regenerated jaxb classes to resolve conflicts JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MATRIX annotation.graph type, with actual matrix type stored in calcId JAL-629 don’t complain for Unary args JAL-4090 move 2.11.3 series release notes to 2.11.3.0 release and premptively list issues already or nearly addressed in this version JAL-4095 slightly better threshold setting and todos for improvement JAL-629 suggest not breaking out of the structure processing loop if just one structure has a bunk sequence association.. JAL-4133 update validChar width when font is changed so characters are suppressed for small widths Fix for JAL-4126 - don’t automatically create a threshold line when no threshold line is needed when reconstructing the annotation colour scheme from a project file Merge branch 'develop' (JAL-4102 2.11.2.6 patch release) into features/r2_11_2_alphafold/JAL-2349_JAL-3855 JAL-1551 source formatting JAL-629 hacked in --tempfac-shading - hardcoded to use existing colours in per-sequence annotation JAL-3077 broken conflict resolve resulted in failing test (nb - still not resolved the issue of (promoted) dbrefs!) JAL-629 labelled breaks are frowned upon by everyone JAL-3858 new MatrixType JAX-RI POJO JAL-3858 persist PAE matrix (only so far) as serialised floats in element on dataset sequence annotation. Rudimentary tests. Merge branch 'features/r2_11_2_alphafold/JAL-629' into features/JAL-3858_PAEsInProjects Conflicts: src/jalview/bin/Jalview.java JAL-1713 don’t close an automatically created overview window for projects from Jalview versions older than 2.11.3 JAL-4126 comment out closeAll - so we can visually check the alignment frame as it is restored JAL-629 don’t trash user’s system property file when adjusting settings to process CL args JAL-4116 relegate the failed to promote warning to Console.debug so most users won’t even see it (or be slowed down by it). JAL-629 need to delay call to AlignFile.parse() if StructureFile needs to configure itself at construction time Merge branch 'features/r2_11_2_alphafold/JAL-629' into features/JAL-3858_PAEsInProjects Conflicts: src/jalview/bin/Jalview.java Merge branch 'develop' into feature/JAL-1713_overviewInProject JAL-4126 failing test - colour scheme appears to be being created and configured, but the renderer is not actually using the colour scheme to shade the sequence when the project is restored. JAL-629 JAL-4124 JAL-3855 test to check we can import PAE matrices in a variety of formats - additional test case JAL-4104 JAL-4102 update help docs with script to add jalview command line tool to osx path Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL-4054+JAL-4064' into develop JAL-3858 simple test for PAE matrix recovery Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL-3855' into features/r2_11_2_alphafold/JAL-629 JAL-1551 remove temp file in src JAL-629 make sure we show GUI when not driven programmatically JAL-4095 magic fill behaviour is PAE specific JAL-629 don’t carry on Jalview.main if we’ve already processed command line args another way	Testless build

Build	Completed	Code commits	Tests