System Error Details
Build Jalview Builds - Gradle Develop Build - features-JAL-4489_cluster_pca_and_pasimap
: Unable to detect changes
Occurred: 21 Nov 2024, 10:20:16 AM
(com.atlassian.bamboo.plugins.git.GitCommandException : command [/bin/git -c 'credential.helper=store --file=/home/bamboo/latest/temp/gitCredentials9129262491269188345.tmp' ls-remote http://source.jalview.org/git/jalview.git] failed with code 128. Working directory was [/home/bamboo/latest/temp]., stderr:
fatal: http://source.jalview.org/git/jalview.git/info/refs not valid: is this a git repository?)
Occurred: 21 Nov 2024, 10:20:16 AM
com.atlassian.bamboo.plugins.git.GitCommandException: command [/bin/git -c 'credential.helper=store --file=/home/bamboo/latest/temp/gitCredentials9129262491269188345.tmp' ls-remote http://source.jalview.org/git/jalview.git] failed with code 128. Working directory was [/home/bamboo/latest/temp]., stderr: fatal: http://source.jalview.org/git/jalview.git/info/refs not valid: is this a git repository? at com.atlassian.bamboo.plugins.git.GitCommandProcessor.runCommand(GitCommandProcessor.java:703) at com.atlassian.bamboo.plugins.git.GitCommandProcessor.getRemoteRefs(GitCommandProcessor.java:481) at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.lambda$getRemoteRefs$1(NativeGitOperationHelper.java:585) at com.atlassian.bamboo.util.CallableResultCache$1.load(CallableResultCache.java:38) at com.atlassian.bamboo.util.CallableResultCache$1.load(CallableResultCache.java:34) at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture(LocalCache.java:3527) at com.google.common.cache.LocalCache$Segment.loadSync(LocalCache.java:2319) at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad(LocalCache.java:2282) at com.google.common.cache.LocalCache$Segment.get(LocalCache.java:2197) at com.google.common.cache.LocalCache.get(LocalCache.java:3937) at com.google.common.cache.LocalCache.getOrLoad(LocalCache.java:3941) at com.google.common.cache.LocalCache$LocalLoadingCache.get(LocalCache.java:4824) at com.atlassian.bamboo.collections.AlwaysInvalidatingCacheDecorator.get(AlwaysInvalidatingCacheDecorator.java:64) at com.atlassian.bamboo.collections.AlwaysInvalidatingCacheDecorator.getUnchecked(AlwaysInvalidatingCacheDecorator.java:125) at com.atlassian.bamboo.util.CallableResultCache.call(CallableResultCache.java:141) at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.getRemoteRefs(NativeGitOperationHelper.java:593) at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.resolveBranch(NativeGitOperationHelper.java:545) at com.atlassian.bamboo.plugins.git.NativeGitOperationHelper.obtainLatestRevision(NativeGitOperationHelper.java:644) at com.atlassian.bamboo.plugins.git.v2.GitChangeDetector.collectChanges(GitChangeDetector.java:152) at com.atlassian.bamboo.plugins.git.v2.GitChangeDetector.collectChangesSinceRevision(GitChangeDetector.java:71) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectionChangesWithRetry(DefaultChangeDetectionManager.java:579) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.lambda$createBuildRepositoryChanges$2(DefaultChangeDetectionManager.java:478) at com.atlassian.bamboo.variable.CustomVariableContextImpl.withVariableSubstitutor(CustomVariableContextImpl.java:185) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectChangesSinceLastBuildInternal(DefaultChangeDetectionManager.java:439) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectChangesSinceRevisions(DefaultChangeDetectionManager.java:291) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectChangesSinceRevisions(DefaultChangeDetectionManager.java:216) at com.atlassian.bamboo.v2.trigger.DefaultChangeDetectionManager.collectChangesSinceLastBuildIfTriggered(DefaultChangeDetectionManager.java:137) at com.atlassian.bamboo.v2.trigger.ChangeDetectionListenerAction.testIfBuildShouldStart(ChangeDetectionListenerAction.java:105) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$3.call(PlanExecutionManagerImpl.java:448) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl$3.call(PlanExecutionManagerImpl.java:435) at io.atlassian.util.concurrent.ManagedLocks$ManagedLockImpl.withLock(ManagedLocks.java:293) at com.atlassian.bamboo.plan.PlanExecutionLockServiceImpl.lock(PlanExecutionLockServiceImpl.java:75) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.doWithProcessLock(PlanExecutionManagerImpl.java:655) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.startConditionalBuild(PlanExecutionManagerImpl.java:435) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.start(PlanExecutionManagerImpl.java:487) at com.atlassian.bamboo.plan.PlanExecutionManagerImpl.start(PlanExecutionManagerImpl.java:500) at com.atlassian.bamboo.plan.DelegatingPlanExecutionManager.start(DelegatingPlanExecutionManager.java:79) at com.atlassian.bamboo.plan.NonBlockingPlanExecutionServiceImpl$4.startPlanExecution(NonBlockingPlanExecutionServiceImpl.java:197) at com.atlassian.bamboo.plan.NonBlockingPlanExecutionServiceImpl$4.lambda$call$0(NonBlockingPlanExecutionServiceImpl.java:186) at com.atlassian.bamboo.util.CacheAwareness$3.call(CacheAwareness.java:136) at com.atlassian.bamboo.util.CacheAwareness$3.call(CacheAwareness.java:133) at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:162) at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:133) at com.atlassian.bamboo.util.CacheAwareness.withValuesOlderThanTimestampReloaded(CacheAwareness.java:187) at com.atlassian.bamboo.plan.NonBlockingPlanExecutionServiceImpl$4.call(NonBlockingPlanExecutionServiceImpl.java:185) at com.atlassian.bamboo.plan.NonBlockingPlanExecutionServiceImpl$4.call(NonBlockingPlanExecutionServiceImpl.java:170) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at com.atlassian.bamboo.utils.BambooRunnables$1.run(BambooRunnables.java:48) at com.atlassian.bamboo.security.ImpersonationHelper.runWith(ImpersonationHelper.java:26) at com.atlassian.bamboo.security.ImpersonationHelper.runWithSystemAuthority(ImpersonationHelper.java:17) at com.atlassian.bamboo.security.ImpersonationHelper$1.run(ImpersonationHelper.java:41) at java.lang.Thread.run(Thread.java:748)